Data Sheet 3_Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio.zip by Ibukun John Abulude (21084308)

“…By applying Markov Cluster Algorithm and AlphaFold-Multimer to analyze the protein network and interaction partners of the AP-PEPs, we predicted high-confidence protein-protein interactions and two structurally similar but unique novel protein complexes formed among proteins of the Bd2209-Bd2212 and Bd2723-Bd2726 operons. …”

Prediction scores of directed PTM-PPIs. by Aimilia-Christina Vagiona (17584758)

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Nodes of the hPIN. by Aimilia-Christina Vagiona (17584758)

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Enrichment analysis of predicted effectors. by Aimilia-Christina Vagiona (17584758)

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Properties of the hPIN. by Aimilia-Christina Vagiona (17584758)

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Training dataset of experimentally known phosphorylation and dephosphorylation PPIs. by Aimilia-Christina Vagiona (17584758)

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ROC curves and AUC scores to compare the classifier performance of the different data sets containing various number of features. by Aimilia-Christina Vagiona (17584758)

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Components of a critical PPI network involved in SCA1 pathogenesis. by Aimilia-Christina Vagiona (17584758)

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Edges of the hPIN. by Aimilia-Christina Vagiona (17584758)

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Evaluation of the model. by Aimilia-Christina Vagiona (17584758)

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Properties of the 14 features that were used for building the model. by Aimilia-Christina Vagiona (17584758)

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Structure of the work presented in this manuscript. by Aimilia-Christina Vagiona (17584758)

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Confirmation of hub MitoDEGs expression and association with cardiac function in MI mice. by Wenlong Kuang (20485167)

Filled contour plot based on histograms of the occurence-frequency of binned values of and as a function of . by Paul Kinsler (3975620)

Accelerated MPC Algorithms and Augmented System Design for Legged Robots by John Ndegwa Nganga (21088838)

“…The approach is powered by a newly introduced algorithm, named the modified Recursive Newton Euler Algorithm~(mRNEA), which is inspired by classical RNEA, and computes the dynamics information pre-multiplied with a fixed vector. …”

Comparison of different methods. by Wenjing Wang (181404)

“…The average running time of the proposed algorithm in Sphere function and Griebank function was 2.67s and 1.64s, respectively. …”

SHAP values for chromatin-associated proteins profiled in integrative model from Hughes et al. [21] and Wang et al. [22] (A) Heatmap of absolute mean SHAP values for different algo... by Kashyap Chhatbar (9515350)

The content of the speech. by Li Jiashen (20552690)

“…The algorithm enhances the traditional Stockwell transform (S-transform) by incorporating a low-pass filtering function and introducing two adjustable parameters. …”

Time domain diagram of speech signal. by Li Jiashen (20552690)

“…The algorithm enhances the traditional Stockwell transform (S-transform) by incorporating a low-pass filtering function and introducing two adjustable parameters. …”

Example of a typical workflow to construct a network using NeKo. by Marco Ruscone (11747264)