2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome by Olga Botvinnik (20571431)

Subjects:

Immune infiltration analysis by ssGSEA algorithm. by Yubin Xue (1537042)

Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. by Jie Chu (293795)

Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

Subjects:

Comparison of UACI among different algorithms. by Feixian Liu (22477943)

“…Based on the 2D-SQSM, this paper further designs a highly robust color image encryption algorithm. First, by introducing different hash functions multiple times, the correlation between the key and plaintext is enhanced, significantly improving resistance against brute-force attacks; second, cyclic shifting and segmentation-recombination operations are applied separately to the three RGB channels to effectively disrupt pixel distribution and significantly reduce spatial correlation between pixels; finally, the chaotic sequence generated by the 2D-SQSM is utilized for XOR diffusion, further enhancing the randomness and diffusion capability of the ciphertext. …”

Comparison of NPCR among different algorithms. by Feixian Liu (22477943)

“…Based on the 2D-SQSM, this paper further designs a highly robust color image encryption algorithm. First, by introducing different hash functions multiple times, the correlation between the key and plaintext is enhanced, significantly improving resistance against brute-force attacks; second, cyclic shifting and segmentation-recombination operations are applied separately to the three RGB channels to effectively disrupt pixel distribution and significantly reduce spatial correlation between pixels; finally, the chaotic sequence generated by the 2D-SQSM is utilized for XOR diffusion, further enhancing the randomness and diffusion capability of the ciphertext. …”

The results of LASSO regression algorithm. by Xue Fu (549661)

The GOR4 and SOPMA algorithm findings. by Ahmad Abdullah Mahdeen (19704401)

Immune infiltration analysis by CIBERSORT algorithm. by Lanying Shen (22755930)

Immune infiltration analysis by CIBERSORT algorithm. by Lanying Shen (22755930)

MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins by Martin J. Fossat (3714079)

Subjects: “…mathematically exact algorithm…”

A Chemoproteomic Approach for System-Wide and Site-Specific Uncovering of Functional Protein N‑Glycosylation by Guoli Wang (59357)

Subjects:

A detailed process of iterative simulation coupled with bone density algorithm; (a) a function of stimulus and related bone density changes, and (b) iterative calculations of finit... by Hassan Mehboob (8960273)

NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides by Zhihan Zhang (1403308)

“…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …”

Top-ranked hub genes identified by 5 cytoHubba algorithms. by Jun Li (6494)

Left: the algorithm’s best estimate of where to put breakpoints for each number of breakpoints considered. by Zhengtian Li (5076704)

Depiction of how the label of is assigned as a function of whether are identical (row =), nested (rows ), or partially overlapping (row “else”), and as a function of the labels of... by Jordan Moutet (21800145)

Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes by Vijay Subramanian (20718933)

“…<p dir="ltr">Supplementary material for Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes.…”

Code snippets to add user-specific custom functionality in PyNoetic. by Gursimran Singh (575288)

Subjects:

Modular architecture design of PyNoetic showing all its constituent functions. by Gursimran Singh (575288)

Subjects: