The algorithm is designed to identify patterns in the treatment dataset. by Belén Otero-Carrasco (21262360)

Genetic algorithms can be applied to higher-dimensional design problems. by Lu Hong (399882)

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Cell synthesis protein. by Qi Song (121209)

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GA[ESM,pMPNN,AF2Rank] algorithm flowchart. by Lu Hong (399882)

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RfaH genetic algorithm benchmark simulations at additional mutation rates. by Lu Hong (399882)

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Genetic algorithm RfaH designs exhibit greater sequence similarity to NusG-like foldswitching proteins than non-foldswitching proteins. by Lu Hong (399882)

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Left: the algorithm’s best estimate of where to put breakpoints for each number of breakpoints considered. by Zhengtian Li (5076704)

PATH has state-of-the-art performance versus previous binding affinity prediction algorithms. by Yuxi Long (11024307)

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Two protein-ligand complexes shown with their persistence fingerprint. by Yuxi Long (11024307)

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The GOR4 and SOPMA algorithm findings. by Ahmad Abdullah Mahdeen (19704401)

Using ESM-1v as an objective function biases sampling towards RfaHβ-like sequences with lower native sequence recovery. by Lu Hong (399882)

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Computational predictions in the protein-protein interface of the c-Raf-RBD:KRas complex for c-Raf-RBD(RK) and the novel variant c-Raf-RBD(RKY). by Anna U. Lowegard (8051597)

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PATH (with persistence fingerprint) runs significantly faster than TNet-BP, a representative binding affinity prediction algorithm that uses persistent homology, on larger protein-... by Yuxi Long (11024307)

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Functional annotation enrichment for undruggable human disease associated proteins selected by PortalCG. by Tian Cai (4227052)

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Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…In this work, we introduce <i>GlycanDock</i>, a residue-centric protein–glycoligand docking refinement algorithm developed within the Rosetta macromolecular modeling and design software suite. …”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…In this work, we introduce <i>GlycanDock</i>, a residue-centric protein–glycoligand docking refinement algorithm developed within the Rosetta macromolecular modeling and design software suite. …”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…In this work, we introduce <i>GlycanDock</i>, a residue-centric protein–glycoligand docking refinement algorithm developed within the Rosetta macromolecular modeling and design software suite. …”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…In this work, we introduce <i>GlycanDock</i>, a residue-centric protein–glycoligand docking refinement algorithm developed within the Rosetta macromolecular modeling and design software suite. …”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…In this work, we introduce <i>GlycanDock</i>, a residue-centric protein–glycoligand docking refinement algorithm developed within the Rosetta macromolecular modeling and design software suite. …”

Visualization by PaCMAP [52] shows that persistence fingerprint clusters protein-ligand complexes with similar binding affinity reasonably well, even beyond the training dataset (P... by Yuxi Long (11024307)

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