Table 2_Identification and experimental validation of demethylation-related genes in diabetic nephropathy.xlsx حسب Hui Miao (143177)

"…To identify key genes, the Least absolute shrinkage and selection operator (LASSO) and Boruta algorithm, and expression validation were used for screening. …"

Table 5_Identification and experimental validation of demethylation-related genes in diabetic nephropathy.xlsx حسب Hui Miao (143177)

"…To identify key genes, the Least absolute shrinkage and selection operator (LASSO) and Boruta algorithm, and expression validation were used for screening. …"

Table 3_Identification and experimental validation of demethylation-related genes in diabetic nephropathy.xlsx حسب Hui Miao (143177)

"…To identify key genes, the Least absolute shrinkage and selection operator (LASSO) and Boruta algorithm, and expression validation were used for screening. …"

Overview of the study. حسب Bengi Ruken Yavuz (21983004)

"…After obtaining 3424 significant mutation pairs, we mapped their components to pathways and tissues for functional interpretation. This helped identify co-altered pathways and protein pairs harboring the mutations specific to tissues. …"

Table1_Comprehensive analysis of IRF8-related genes and immune characteristics in lupus nephritis.DOC حسب Zhibin Yu (1450102)

"…</p>Methods<p>We used differential expression analysis, functional enrichment, protein-protein interaction (PPI) network construction, and the CIBERSORT algorithm for immune infiltration assessment. …"

DataSheet1_Comprehensive analysis of IRF8-related genes and immune characteristics in lupus nephritis.ZIP حسب Zhibin Yu (1450102)

"…</p>Methods<p>We used differential expression analysis, functional enrichment, protein-protein interaction (PPI) network construction, and the CIBERSORT algorithm for immune infiltration assessment. …"

Table1_Transcriptome combined with Mendelian randomization to screen key genes associated with mitochondrial and programmed cell death causally associated with diabetic retinopathy... حسب Shule Jiang (20295756)

"…Key genes were identified through protein-protein interaction (PPI) analysis using six algorithms (DEgree, DMNC, EPC, MCC, Genes are BottleNeck, and MNC) within Cytoscape software. …"

Table2_Transcriptome combined with Mendelian randomization to screen key genes associated with mitochondrial and programmed cell death causally associated with diabetic retinopathy... حسب Shule Jiang (20295756)

"…Key genes were identified through protein-protein interaction (PPI) analysis using six algorithms (DEgree, DMNC, EPC, MCC, Genes are BottleNeck, and MNC) within Cytoscape software. …"

Table3_Transcriptome combined with Mendelian randomization to screen key genes associated with mitochondrial and programmed cell death causally associated with diabetic retinopathy... حسب Shule Jiang (20295756)

"…Key genes were identified through protein-protein interaction (PPI) analysis using six algorithms (DEgree, DMNC, EPC, MCC, Genes are BottleNeck, and MNC) within Cytoscape software. …"

Table4_Transcriptome combined with Mendelian randomization to screen key genes associated with mitochondrial and programmed cell death causally associated with diabetic retinopathy... حسب Shule Jiang (20295756)

"…Key genes were identified through protein-protein interaction (PPI) analysis using six algorithms (DEgree, DMNC, EPC, MCC, Genes are BottleNeck, and MNC) within Cytoscape software. …"

Image1_Transcriptome combined with Mendelian randomization to screen key genes associated with mitochondrial and programmed cell death causally associated with diabetic retinopathy... حسب Shule Jiang (20295756)

"…Key genes were identified through protein-protein interaction (PPI) analysis using six algorithms (DEgree, DMNC, EPC, MCC, Genes are BottleNeck, and MNC) within Cytoscape software. …"

Evaluating docking approaches for prediction of cyclodextrin and cucurbituril host–guest complex structures حسب N.-F.J. Ettema (22683726)

"…Our results suggest that while docking functions – broadly intended for protein–ligand complexes – are generally limited by either their scoring function’s ability to capture orientation-sensitive interactions, or the effectiveness of their search algorithms to sample conformational space. …"

CSPP instance حسب peixiang wang (19499344)

"…</b></p><p dir="ltr">Its primary function is to create structured datasets that simulate container terminal operations, which can then be used for developing, testing, and benchmarking optimization algorithms (e.g., for yard stacking strategies, vessel stowage planning).…"

Spatiotemporal Soil Erosion Dataset for the Yarlung Tsangpo River Basin (1990–2100) حسب peng xin (21382394)

"…Bias correction was conducted using a 25-year baseline (1990–2014), with adjustments made monthly to correct for seasonal biases. The corrected bias functions were then applied to adjust the years (2020–2100) of daily rainfall data using the "ibicus" package, an open-source Python tool for bias adjustment and climate model evaluation. …"

Data Sheet 1_Feature selection and aggregation for antibiotic resistance GWAS in Mycobacterium tuberculosis: a comparative study.pdf حسب Kirill Reshetnikov (21562853)

"…In this study, we evaluated several such methods, namely, logistic regression with different regularization penalty functions, a recently introduced algorithm for solving the best-subset selection problem (ABESS) and “Hungry, Hungry SNPos” (HHS) a heuristic algorithm specifically developed to identify resistance-associated genetic variants in the presence of resistance co-occurrence. …"

Data Sheet 1_Genome-wide expression in human whole blood for diagnosis of latent tuberculosis infection: a multicohort research.pdf حسب Fan Jiang (144211)

"…Cohorts were stratified into training (8 cohorts, n = 1,933) and validation sets (3 cohorts, n = 825) based on functional assignment.</p>Results<p>Through Upset analysis, LASSO (Least Absolute Shrinkage and Selection Operator), SVM-RFE (Support Vector Machine Recursive Feature Elimination), and MCL (Markov Cluster Algorithm) clustering of protein–protein interaction networks, we identified S100A12 and S100A8 as optimal biomarkers. …"

Sample ESTIMATE score dataset (AR vs CTRL). حسب MaoMeng Wang (22177417)

"…A gene co-expression network was constructed via the Weighted Gene Co-Expression Network Analysis (WGCNA) algorithm to identify disease-related modules. Differentially expressed genes (DEGs) were identified using the linear models for microarray data (limma) R package (version 3.34.7), followed by functional enrichment analysis using DAVID. …"

STRING PPI network edges dataset. حسب MaoMeng Wang (22177417)

"…A gene co-expression network was constructed via the Weighted Gene Co-Expression Network Analysis (WGCNA) algorithm to identify disease-related modules. Differentially expressed genes (DEGs) were identified using the linear models for microarray data (limma) R package (version 3.34.7), followed by functional enrichment analysis using DAVID. …"

Structural changes of the nasal mucosa. حسب MaoMeng Wang (22177417)

"…A gene co-expression network was constructed via the Weighted Gene Co-Expression Network Analysis (WGCNA) algorithm to identify disease-related modules. Differentially expressed genes (DEGs) were identified using the linear models for microarray data (limma) R package (version 3.34.7), followed by functional enrichment analysis using DAVID. …"

General symptom scores of the mice. حسب MaoMeng Wang (22177417)

"…A gene co-expression network was constructed via the Weighted Gene Co-Expression Network Analysis (WGCNA) algorithm to identify disease-related modules. Differentially expressed genes (DEGs) were identified using the linear models for microarray data (limma) R package (version 3.34.7), followed by functional enrichment analysis using DAVID. …"