NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides by Zhihan Zhang (1403308)

“…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …”

Top-ranked hub genes identified by 5 cytoHubba algorithms. by Jun Li (6494)

Left: the algorithm’s best estimate of where to put breakpoints for each number of breakpoints considered. by Zhengtian Li (5076704)

Depiction of how the label of is assigned as a function of whether are identical (row =), nested (rows ), or partially overlapping (row “else”), and as a function of the labels of... by Jordan Moutet (21800145)

Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes by Vijay Subramanian (20718933)

“…<p dir="ltr">Supplementary material for Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes.…”

Code snippets to add user-specific custom functionality in PyNoetic. by Gursimran Singh (575288)

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Modular architecture design of PyNoetic showing all its constituent functions. by Gursimran Singh (575288)

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PATH has state-of-the-art performance versus previous binding affinity prediction algorithms. by Yuxi Long (11024307)

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Connectivity of dysregulated proteins in SCA1 cells. by Aimilia-Christina Vagiona (17584758)

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Critical proteins associated with SCA1 pathology. by Aimilia-Christina Vagiona (17584758)

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Comparison of PyNoetic’s functionality for BCI design with other existing state-of-the-art frameworks. by Gursimran Singh (575288)

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Significantly dysregulated proteins (|log2FC | ≤  0.5, adj. p-value ≤  0.05) in SCA1 (805 proteins). by Aimilia-Christina Vagiona (17584758)

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Reagents, software, and algorithms used in the study with their sources for result reproduction. by Aanchal Yadav (14206853)

Identification of big gaps between inferred protein angles. by Aimilia-Christina Vagiona (17584758)

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The statistics of number of proteins and phosphorylation S/T/Y sites for different organisms. by Chao Wang (146527)

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Overview of functionality supported by PyNoetic and its various modules, including the live analysis and programmable flowchart. by Gursimran Singh (575288)

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PATH (with persistence fingerprint) runs significantly faster than TNet-BP, a representative binding affinity prediction algorithm that uses persistent homology, on larger protein-... by Yuxi Long (11024307)

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(a-b) The LASSO algorithm was used for hyperparameter tuning and identification of the important predictive features. by Devi Soorya Narayana Sasikumar (22331743)

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Cost functions implemented in Neuroptimus. by Máté Mohácsi (20469514)

Optimization Performance Comparison of Metaheuristic Algorithms. by Xie Qiu (13243770)