Results of the application of different clustering algorithms to average functional connectivity from healthy subjects. by Francisco Páscoa dos Santos (16510676)

“…Inertia was calculated using the scikit learn module in Python. B) Resulting cluster distance from hierarchical clustering to averaged functional connectivity from healthy subjects, with different numbers of clusters. …”

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Adaptive H-REMD simulation algorithm. by Danial Pourjafar-Dehkordi (7165523)

Listed python codes of our algorithm with explanations (Python 3.9 recommended). by Takayuki Niizato (162226)

The schematic view of the Radial Basis Function (RBF) algorithm. by Mohsen Yoosefzadeh-Najafabadi (6917399)

The SCOPer algorithm can be run efficiently on multiple cores. by Nima Nouri (2183760)

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

Subjects:

Skeletonisation algorithm. by Jordan Hembrow (16908051)

An expectation-maximization algorithm for finding noninvadable stationary states. by Robert Marsland (8616483)

“…<i>(b)</i> Metabolic byproducts move the relevant unperturbed state from <b>R</b>⁰ (gray ‘x’) to (black ‘x’), which is itself a function of the current environmental conditions. …”

<b>Algorithm Pseudocode</b> by Yibin Zhao (22425801)

Verification of the in-line PS function. by Raul Castañeda (13932971)

Example of landmark registration to align ‘peaks’ of high density in the probability density function (PDF) of CD4 expression on blood T cells for a target distribution and chosen... by Ross J. Burton (10941910)

The SSIM for the different algorithms. by Bingbing Li (461702)

Subjects:

(a) Flow chart for PSO algorithm (b) position and velocity update of particles (c) convergence of PSO. by Waqas Anjum (8415186)

Phosphorylation-specific motifs identified by the Motif-X algorithm. by Xiaoxiao Qin (9247765)

Gene function enrichment analysis: GO function enrichment analysis (A) and KEGG pathway enrichment analysis (B). by Yaling Hu (11648397)

(a-b) The LASSO algorithm was used for hyperparameter tuning and identification of the important predictive features. by Devi Soorya Narayana Sasikumar (22331743)

Subjects:

The eVIP algorithm uses RNA-seq data to predict the function of somatic mutations. by Alexis M. Thornton (11068403)

Subjects:

Functional annotations of peaks. by Azusa Tanaka (540528)

Conservation and functional variation across TcdB subtypes. by Michael J. Mansfield (9922934)