Local topological scales of hierarchical community organization in structural and functional brain graphs. by Arian Ashourvan (6685232)

Linear relationship between ln(methadone concentration) and ln(methadone dose) by enantiomer and <i>CYP2B6</i> genotype function. by Andrew H. Talal (8727396)

Linear relationship between ln(methadone metabolism) and ln(methadone dose) by enantiomer and <i>CYP2B6</i> genotype function. by Andrew H. Talal (8727396)

(a) Radar chart of these algorithms (23 Benchmark functions), (b) The sorting diagram of these algorithms (23 Benchmark functions). by Yu Liu (6938)

“…<p>(a) Radar chart of these algorithms (23 Benchmark functions), (b) The sorting diagram of these algorithms (23 Benchmark functions).…”

Python-based Monte Carlo Simulation Tool by Yangfan Jiang (9372782)

gmxapi usage examples. by M. Eric Irrgang (4487278)

Comparison of scores obtained by our interpenetration and scoring algorithm (ISA) and ROSETTA for a subset of structures. by Kevin Sawade (16726527)

“…However, our algorithm was 1000 times faster than pyROSETTA (both algorithms have been parallelized on a per-structure basis using the Python package joblib [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1010531#pcbi.1010531.ref069" target="_blank">69</a>]).…”

Equilibrium membrane displacement as a function of active force. by Kai Liu (159026)

Evolution of the rescaled hydraulic diameter () and complexity () in both simulations and seal tomograms as a function of simulation timestep and relative age (). by Jonathan E Kings (20818367)

Construction of the PRG score index using integrated machine learning algorithms. by Xiangxin Wu (22320058)

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”

Cobalt-Complexed Acetylenic Tetrads, a Molecular Scaffold for Quadruple Ionic Functionalization Reactions by Gagik G. Melikyan (1532986)

“…A methodology was developed for introducing nucleophiles into the α- and α′-positions of the dicobalt hexacarbonyl-complexed acetylenic tetrads. A synthetic algorithm included the entry of a given nucleophile to both termini of the acetylenic tetrad <b>A</b> (α-Nu¹-α′-Nu¹; α-Nu²-α′-Nu²), or a pair of select nucleophiles arranged unsymmetrically in opposing sequences (α-Nu¹-α′-Nu²; α-Nu²-α′-Nu¹). …”

Pseudocode of the RPath algorithm. by Daniel Domingo-Fernández (5432273)

“…., <i>lmax)</i>, the core function of the algorithm, <i>is_drug_prioritized</i>, returns whether a drug should be prioritized or not. …”

Automatic cropping algorithm. by Thomas W Georgi (12427189)

Principal component analysis applied to both datasets. by Anny K. G. Rodrigues (11689849)

Attack and defense behaviors with the sensory–motor algorithm between multiple predators and prey. by Hiroyuki Ichijo (13891153)

Spatial properties of RFs generated by thresholding algorithms and in macaques’ V1 and V2. by Ilias Rentzeperis (10215602)

The number of inactive nodes as a function of time steps in (a) a random network and (b) a scale-free network. by Waseem Al-Aqqad (14123917)

PyNoetic’s stimuli generation and recording module, which supports both ERP and SSVEP. by Gursimran Singh (575288)

Subjects:

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data by Jean-Christophe Lachance (6619307)

“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”