Listed python codes of our algorithm with explanations (Python 3.9 recommended). by Takayuki Niizato (162226)

Visual depiction of the MSA algorithm. by Kayson Fakhar (12890364)

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

“…For a RDKit molecule, it provides (i) a PNG binary string with an image of the molecule with color-highlighted functional groups; (ii) a list of sets of atom indices (idx), each set corresponding to a functional group; (iii) a list of pseudo-SMILES canonicalized strings for the full functional groups; and (iv) a list of RDKit labeled mol objects, one for each full functional group. …”

Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results by Se-Hee Jo (20554623)

“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”

The TPC algorithm. by Rahul Biswas (14117086)

Subjects:

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”

Python-based Monte Carlo Simulation Tool by Yangfan Jiang (9372782)

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

Subjects:

Similarity between the hierarchical community structure of structural and functional brain graphs. by Arian Ashourvan (6685232)

Local topological scales of hierarchical community organization in structural and functional brain graphs. by Arian Ashourvan (6685232)

Multi-scale detection of hierarchical community architecture in structural and functional brain networks by Arian Ashourvan (6685232)

“…<div><p>Community detection algorithms have been widely used to study the organization of complex networks like the brain. …”

Average quality scores of the models of the analysis set as a function of the <i>w</i>_<i>SP</i> with which the DOPE potential has been included in the objective function... by Giacomo Janson (8138517)

An expectation-maximization algorithm for finding noninvadable stationary states. by Robert Marsland (8616483)

“…<i>(b)</i> Metabolic byproducts move the relevant unperturbed state from <b>R</b>⁰ (gray ‘x’) to (black ‘x’), which is itself a function of the current environmental conditions. …”

Algorithm timings on a laptop computer with Intel i9–9900K CPU, 32GB RAM and an NVIDIA RTX2080 GPU. by Adam L. Tyson (10892822)

Subjects:

Python scripts used to model CPU errors by Poisson distribution density mass function and to draw graph of Poisson events (needs Matplot, SciPy, PysimpleGUI and NumPy) by Santhosh Kumar Rajamani (13023678)

Application of multi-scale community detection to subject-level and group-level resting state functional brain networks. by Arian Ashourvan (6685232)

Workflow of algorithm for whole brain flow simulation. by Erlend Hodneland (391541)

Distribution of cross correlations in functional connectivity in ABIDE sample. by Alexandria M. Jensen (6494957)

Subjects:

Supporting data of the PET image reconstruction using multi-parametric anato-functional priors by Abolfazl Mehranian (11386115)

Rank correlation plot for TF-binding algorithms and the peaBrain impact score. by Moustafa Abdalla (12419257)