A global view of gene ontology (GO) terms enriched in the set of gene pairs with gain-of-correlation (GOC) in resistant (RES) but not in susceptible (SUS) phenotypes. by Fang Liu (13271)

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data by Jean-Christophe Lachance (6619307)

“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”

The optimal solution set of NYN by using different algorithms. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

The optimal solution set of HN by using different algorithms. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz by Faizan Ali (21689861)

Subjects:

Python scripts used to model CPU errors by Poisson distribution density mass function and to draw graph of Poisson events (needs Matplot, SciPy, PysimpleGUI and NumPy) by Santhosh Kumar Rajamani (13023678)

Algorithm framework. by Zongjin Li (38031)

Subjects:

Efficient algorithms to discover alterations with complementary functional association in cancer by Rebecca Sarto Basso (6728921)

“…Among such patterns, <i>mutual exclusivity</i> has been employed by several recent methods that have shown its effectiveness in characterizing gene sets associated to cancer. Mutual exclusivity arises because of the complementarity, at the functional level, of alterations in genes which are part of a group (e.g., a <i>pathway</i>) performing a given function. …”

<b>Gene Catalog and Associated Functional Data</b> for BioProject PRJNA1311452 by Satheeswaran Thangaraj (22187269)

The most significant functions in seven gene sets. by Pengcheng Zhao (6009899)

Verification of the in-line PS function. by Raul Castañeda (13932971)

Available functions in the utility package. by Raul Castañeda (13932971)

MSVM-RFE algorithm for screening key genes. by Ya xi Zhu (11624730)

Performance of ENQUIRE’s gene normalization algorithm. by Luca Musella (19986312)

Probably pathogenic variants (algorithms). by Felipe Fidalgo (642532)

Available functions in the phase-shifting package. by Raul Castañeda (13932971)

Available functions in the numerical propagation package. by Raul Castañeda (13932971)

Available functions in the phase reconstruction package. by Raul Castañeda (13932971)

GSEA Analysis of Differentially Expressed Genes in High and Low-Risk Groups. by Jie Chu (293795)

Subjects:

Comparison of results of different algorithms. by Zhongzhong Guo (12133402)

Subjects: “…differentially expressed genes…”