Comparison of BLAST, FFPRED, CSSAG, STDNN, MTDNN and PFP-WGAN on dataset 2. by Seyyede Fatemeh Seyyedsalehi (10196767)

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Comparison of BLAST, DeepGO-Seq and PFP-WGAN on dataset 1. by Seyyede Fatemeh Seyyedsalehi (10196767)

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Sensitivity of the PFP-WGAN on parameter λ₁. by Seyyede Fatemeh Seyyedsalehi (10196767)

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Three term-centric measures suitable for unbalanced data. by Seyyede Fatemeh Seyyedsalehi (10196767)

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ADT: A Generalized Algorithm and Program for Beyond Born–Oppenheimer Equations of “<i>N</i>” Dimensional Sub-Hilbert Space by Koushik Naskar (7510592)

“…In order to overcome such shortcoming, we develop a generalized algorithm, “ADT” to generate the nonadiabatic equations through symbolic manipulation and to construct highly accurate diabatic surfaces for molecular processes involving excited electronic states. …”

Top-ranked hub genes identified by 5 cytoHubba algorithms. by Jun Li (6494)

NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides by Zhihan Zhang (1403308)

“…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …”

Dynamical comparison between Drosha and Dicer reveals functional motion similarities and dissimilarities by Rotem Aharoni (8108177)

“…Since dynamics is essential for protein function, a comparison at their dynamics level is fundamental for a complete understanding of the overall relations between these proteins. …”

Supplementary Files 1-11 from Protein Signatures of NK Cell–Mediated Melanoma Killing Predict Response to Immunotherapies by Sabrina Cappello (14950324)

Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes by Vijay Subramanian (20718933)

“…<p dir="ltr">Supplementary material for Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes.…”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…These highly diverse chains are recognized by a variety of protein receptors, enabling glycans to regulate many biological functions. …”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…These highly diverse chains are recognized by a variety of protein receptors, enabling glycans to regulate many biological functions. …”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…These highly diverse chains are recognized by a variety of protein receptors, enabling glycans to regulate many biological functions. …”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…These highly diverse chains are recognized by a variety of protein receptors, enabling glycans to regulate many biological functions. …”

Development and Evaluation of GlycanDock: A Protein–Glycoligand Docking Refinement Algorithm in Rosetta by Morgan L. Nance (10981871)

“…These highly diverse chains are recognized by a variety of protein receptors, enabling glycans to regulate many biological functions. …”

Computational predictions in the protein-protein interface of the c-Raf-RBD:KRas complex for c-Raf-RBD(RK) and the novel variant c-Raf-RBD(RKY). by Anna U. Lowegard (8051597)

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Results of the application of different clustering algorithms to average functional connectivity from healthy subjects. by Francisco Páscoa dos Santos (16510676)

“…<p>A) Resulting cluster inertia from applying the k-means algorithm described in the methods to empirical averaged functional connectivity from healthy subjects, with different numbers of clusters. …”

PathOlOgics_RBCs Python Scripts.zip by Ahmed Elsafty (16943883)

Functional enrichment analysis for known genes in AAAKB. by Di Yao (5145401)

Genetic Algorithm for Automated Parameterization of Network Hamiltonian Models of Amyloid Fibril Formation by Gianmarc Grazioli (6752297)

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