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algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
python function » protein function (Expand Search)
algorithm steps » algorithm shows (Expand Search), algorithm models (Expand Search)
steps function » step function (Expand Search), its function (Expand Search), cep function (Expand Search)
algorithm gene » algorithm where (Expand Search), algorithm etc (Expand Search), algorithm pre (Expand Search)
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FAR-1: A Fast Integer Reduction Algorithm Compared to Collatz and Half-Collatz
Published 2025Subjects: -
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BOFdat Step 3: Identifying species-specific metabolic end goals.
Published 2019“…(B) Schematic description of the effect of adding a biomass precursor on the prediction of gene essentiality in the model. A simplified metabolic network composed of two linear pathways is depicted with its corresponding stoichiometric matrix S, in which the objective function is presented in the blue column (<i>v</i><sub><i>obj</i></sub>). …”
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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…In `main.py`, the parameters for the TAMS algorithm are specified (trajectory time, time step, score function, number of particles, type of score threshold, maximum number of iterations, noise level etc.). …”
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Overview of the Cell2Spatial algorithm.
Published 2025Subjects: “…minimizing assignment algorithm…”
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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Published 2019“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”
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Functional impact of non-preserved modules-based gene ontology (biological processes category).
Published 2024Subjects: -
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