PyNoetic’s classification module supports a range of popular and widely used ML classification models with just a single line of function call. by Gursimran Singh (575288)

Subjects:

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data by Jean-Christophe Lachance (6619307)

“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”

Python code for a rule-based NLP model for mapping circular economy indicators to SDGs by Zahir Barahmand (18008947)

“…The package includes:</p><ul><li>The complete Python codebase implementing the classification algorithm</li><li>A detailed manual outlining model features, requirements, and usage instructions</li><li>Sample input CSV files and corresponding processed output files to demonstrate functionality</li><li>Keyword dictionaries for all 17 SDGs, distinguishing strong and weak matches</li></ul><p dir="ltr">These materials enable full reproducibility of the study, facilitate adaptation for related research, and offer transparency in the methodological framework.…”

Simulation of multiple agents minimizing the dissonance function following homophily by Mohsen Raoufi (18775639)

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

Ms.FPOP: A Fast Exact Segmentation Algorithm with a Multiscale Penalty by Arnaud Liehrmann (10970682)

“…This penalty was proposed by Verzelen et al. and achieves optimal rates for changepoint detection and changepoint localization in a non-asymptotic scenario. Our proposed algorithm, Multiscale Functional Pruning Optimal Partitioning (Ms.FPOP), extends functional pruning ideas presented in Rigaill and Maidstone et al. to multiscale penalties. …”

Design and implementation of DelaySSA. The input data for DelaySSA are reaction information, initial states, parameters and delays. Combining these into the simulation function, th... by Ziyan Jin (21021976)

Performance of the three algorithms. by Juanjuan Lin (2096830)

“…<div><p>Disruptive events cause decreased functionality of transportation infrastructures and enormous financial losses. …”

State Function-Based Correction: A Simple and Efficient Free-Energy Correction Algorithm for Large-Scale Relative Binding Free-Energy Calculations by Runduo Liu (10756379)

“…We present an efficient and straightforward State Function-based Correction (SFC) algorithm, which leverages the state function property of free energy without requiring cycle identification. …”

Modeling with uniform <i>σ</i> values. by Giacomo Janson (8138517)

Effect of <i>|Δd</i>_<i>n</i><i>|</i> perturbation on 3D modeling. by Giacomo Janson (8138517)

Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling by Giacomo Janson (8138517)

“…This program implements the “modeling by satisfaction of spatial restraints” strategy and its core algorithm has not been altered significantly since the early 1990s. …”

Example of use of the slightly off-axis strategies. by Raul Castañeda (13932971)

Example of the fully-compensated phase reconstruction package for off-axis DHM holograms recorded in telecentric configuration. by Raul Castañeda (13932971)

Rosenbrock function losses for . by Shikun Chen (14625352)

“…This approach bridges the gap between model accuracy and optimization efficiency, offering a practical solution for optimizing non-differentiable machine learning models that can be extended to other tree-based ensemble algorithms. The method has been successfully applied to real-world steel alloy optimization, where it achieved superior performance while maintaining all metallurgical composition constraints.…”

Rosenbrock function losses for . by Shikun Chen (14625352)

“…This approach bridges the gap between model accuracy and optimization efficiency, offering a practical solution for optimizing non-differentiable machine learning models that can be extended to other tree-based ensemble algorithms. The method has been successfully applied to real-world steel alloy optimization, where it achieved superior performance while maintaining all metallurgical composition constraints.…”

Levy function losses for . by Shikun Chen (14625352)

“…This approach bridges the gap between model accuracy and optimization efficiency, offering a practical solution for optimizing non-differentiable machine learning models that can be extended to other tree-based ensemble algorithms. The method has been successfully applied to real-world steel alloy optimization, where it achieved superior performance while maintaining all metallurgical composition constraints.…”

Rastrigin function losses for . by Shikun Chen (14625352)

“…This approach bridges the gap between model accuracy and optimization efficiency, offering a practical solution for optimizing non-differentiable machine learning models that can be extended to other tree-based ensemble algorithms. The method has been successfully applied to real-world steel alloy optimization, where it achieved superior performance while maintaining all metallurgical composition constraints.…”

Levy function losses for . by Shikun Chen (14625352)

“…This approach bridges the gap between model accuracy and optimization efficiency, offering a practical solution for optimizing non-differentiable machine learning models that can be extended to other tree-based ensemble algorithms. The method has been successfully applied to real-world steel alloy optimization, where it achieved superior performance while maintaining all metallurgical composition constraints.…”