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algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
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Comparison between simulations for all algorithms and for all cases (1, 2 and 3).
Published 2022Subjects: -
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(<i>Left</i>) Reconstruction and performance of the message-passing algorithm for binary patterns.
Published 2023“…<i>(Center)</i> <b>Phase diagram for the rectified Hopfield channel with</b> <i>P</i> = 1. …”
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Genetic Algorithm (GA) and CAGE-based personalization block diagrams.
Published 2020“…<p>(<b>A</b>) Genetic algorithm schematic diagram. Initially a set of organisms is generated, each of which is determined by a random vector of scaling factors for optimized model parameters (step 1). …”
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Algorithm description and the effects of replay and forgetting on model performance.
Published 2022“…Right: with MB forgetting (controlled by MB forgetting rate, <i>ϕ</i><sup><i>MB</i></sup>), the algorithm’s estimate of reward becomes an expectation of the reward function under its state-transition model. …”
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Evaluation of the optimization algorithm using <i>in vitro</i> microbiome reference values.
Published 2023“…<p>A: Evolution of biomass fraction distribution during the cycles of adaptation enforced by the gradient descent algorithm using a value of <i>α</i> = 0.25 and <i>in vitro</i> abundance data obtained from [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0290082#pone.0290082.ref021" target="_blank">21</a>]; B: Comparison of pie charts for the <i>in vitro</i> reference biomass percentage distributions (left) and the obtained with the modeling strategy based on the gradient descent algorithm (right); C: Performance functional (<i>J</i>) evolution for <i>in vitro</i> microbiome simulation.…”
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Signal detection algorithm adapted from [1] yields exponential distributions and unrealistic mean durations of percepts.
Published 2020“…(Bottom) Trial-by-trial applications of the signal detection algorithm from [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008152#pcbi.1008152.ref001" target="_blank">1</a>] with A: <i>C</i><sub><i>th</i></sub> = 4.01 and B: <i>C</i><sub><i>th</i></sub> = 4.21 yield exponentially distributed subsequent percept durations for <i>I</i> (blue) and <i>S</i> (red). …”
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A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data
Published 2022Subjects: -
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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”
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The signal detection algorithm for constructing a neurometric function (the probability of segregation as a function of time) generates acceptable buildup fits at <i>DF</i> = 1, 3, 6, 9.
Published 2020“…<p>For comparison, see Micheyl et al (2005) [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008152#pcbi.1008152.ref001" target="_blank">1</a>]. Upper panel: mean spike counts <i>m</i><sub><i>t</i>;<i>DF</i></sub> (scatter points) at <i>A</i>-tone selective neurons in A1 during tone <i>B</i> were extracted from [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1008152#pcbi.1008152.ref001" target="_blank">1</a>, (Fig.3A in Ref)]. …”
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