Table 1_Development of an alkaliptosis-related lncRNA risk model and immunotherapy target analysis in lung adenocarcinoma.docx by Xiang Xiong (1810234)

“…</p>Methods<p>The TCGA database was utilized to obtain RNA-seq-based transcriptome profiling data, clinical information, and mutation data. …”

Identification of potential circadian rhythm-related hub genes and immune infiltration in preeclampsia through bioinformatics analysis by Juan Tang (437969)

“…</p> <p>CRH and LEP were identified as circadian rhythm-related hub genes with strong diagnostic value. Molecular subtyping based on their expression revealed two PE subtypes with distinct immune infiltration patterns and biological functions. …”

Data_Sheet_3_Comprehensive analysis of the diagnostic and therapeutic value, immune infiltration, and drug treatment mechanisms of GTSE1 in lung adenocarcinoma.docx by Guanqiang Yan (18472116)

“…Subsequently, the prognostic ability of GTSE1 was evaluated based on clinical follow-up data using methods such as using univariate, multivariate, and prognostic meta-analysis. …”

Data_Sheet_1_Comprehensive analysis of the diagnostic and therapeutic value, immune infiltration, and drug treatment mechanisms of GTSE1 in lung adenocarcinoma.docx by Guanqiang Yan (18472116)

“…Subsequently, the prognostic ability of GTSE1 was evaluated based on clinical follow-up data using methods such as using univariate, multivariate, and prognostic meta-analysis. …”

Supplementary file 1_Single-cell and bulk transcriptomic analyses reveal PANoptosis-associated immune dysregulation of fibroblasts in periodontitis.zip by Erli Wu (17785482)

“…By integrating bulk transcriptomic data with machine learning algorithms, we identified and validated key PANoptosis-related genes, highlighting their potential as novel therapeutic targets.…”

Table 1_Explainable machine learning model for predicting the outcome of acute ischemic stroke after intravenous thrombolysis.docx by Fanhai Bu (22315168)

“…Introduction<p>Acute ischemic stroke (AIS) patients often experience poor functional outcomes post-intravenous thrombolysis (IVT). …”

Image 13_Immune intrinsic escape signature stratifies prognosis, characterizes the tumor immune microenvironment, and identifies tumorigenic PPP1R8 in glioblastoma multiforme patie... by Ran Du (552530)

“…TIME analysis was carried out using multiple deconvolution algorithms. Additionally, functional assays including CCK8, cell cycle, and apoptosis assays were conducted on PPP1R8-silenced U251 cells using CRISPR/Cas9 technology</p>Results<p>Thirty-six IERGs were associated with GBM outcomes, with 20 linked to poor survival and 16 to better outcomes. …”

Image 1_Polyamine metabolism related gene index prediction of prognosis and immunotherapy response in breast cancer.jpeg by Ruoya Wang (842048)

“…Additionally, we analyzed the immune microenvironment and enriched pathways across different subtypes using multiple algorithms. Finally, the “oncoPredict” R package was used to assess potential drug sensitivities in high-risk and low-risk groups.…”

Table 3_Unveiling ammonia-induced cell death: a new frontier in clear cell renal cell carcinoma prognosis.xlsx by Peize Yu (21837977)

“…Differentially expressed AICD-related genes were identified through differential expression analysis, univariate Cox regression, and machine learning algorithms (LASSO, random forest, and CoxBoost). A prognostic risk model was developed via multivariate Cox regression. …”

Table 1_Identification and verification of biomarkers associated with neutrophils in acute myocardial infarction: integrated analysis of bulk RNA-seq, expression quantitative trait... by Guoqing Liu (93712)

“…A prediction model was constructed based on three hub neutrophil coexpressed genes in AMI, and the results revealed good accuracy. …”

Image 4_Immune intrinsic escape signature stratifies prognosis, characterizes the tumor immune microenvironment, and identifies tumorigenic PPP1R8 in glioblastoma multiforme patien... by Ran Du (552530)

“…TIME analysis was carried out using multiple deconvolution algorithms. Additionally, functional assays including CCK8, cell cycle, and apoptosis assays were conducted on PPP1R8-silenced U251 cells using CRISPR/Cas9 technology</p>Results<p>Thirty-six IERGs were associated with GBM outcomes, with 20 linked to poor survival and 16 to better outcomes. …”

Image 3_Unveiling ammonia-induced cell death: a new frontier in clear cell renal cell carcinoma prognosis.tif by Peize Yu (21837977)

“…Differentially expressed AICD-related genes were identified through differential expression analysis, univariate Cox regression, and machine learning algorithms (LASSO, random forest, and CoxBoost). A prognostic risk model was developed via multivariate Cox regression. …”

Supplementary file 2_The role of α-hydroxybutyrate in modulating sepsis progression: identification of key targets and biomarkers through multi-database data mining, machine learni... by Qing Lu (28914)

“…Sepsis-related targets were obtained from the GEO dataset GSE26440, and the intersection of these datasets was analyzed to reveal common targets. Functional enrichment analysis, protein-protein interaction (PPI) network construction, and machine learning algorithms (L1-LASSO, RF, and SVM) were applied to identify biomarkers. …”

Data Sheet 1_Identification and verification of biomarkers associated with neutrophils in acute myocardial infarction: integrated analysis of bulk RNA-seq, expression quantitative... by Guoqing Liu (93712)

“…A prediction model was constructed based on three hub neutrophil coexpressed genes in AMI, and the results revealed good accuracy. …”

Image 5_Immune intrinsic escape signature stratifies prognosis, characterizes the tumor immune microenvironment, and identifies tumorigenic PPP1R8 in glioblastoma multiforme patien... by Ran Du (552530)

“…TIME analysis was carried out using multiple deconvolution algorithms. Additionally, functional assays including CCK8, cell cycle, and apoptosis assays were conducted on PPP1R8-silenced U251 cells using CRISPR/Cas9 technology</p>Results<p>Thirty-six IERGs were associated with GBM outcomes, with 20 linked to poor survival and 16 to better outcomes. …”

Image 10_Immune intrinsic escape signature stratifies prognosis, characterizes the tumor immune microenvironment, and identifies tumorigenic PPP1R8 in glioblastoma multiforme patie... by Ran Du (552530)

“…TIME analysis was carried out using multiple deconvolution algorithms. Additionally, functional assays including CCK8, cell cycle, and apoptosis assays were conducted on PPP1R8-silenced U251 cells using CRISPR/Cas9 technology</p>Results<p>Thirty-six IERGs were associated with GBM outcomes, with 20 linked to poor survival and 16 to better outcomes. …”

Image 8_Immune intrinsic escape signature stratifies prognosis, characterizes the tumor immune microenvironment, and identifies tumorigenic PPP1R8 in glioblastoma multiforme patien... by Ran Du (552530)

“…TIME analysis was carried out using multiple deconvolution algorithms. Additionally, functional assays including CCK8, cell cycle, and apoptosis assays were conducted on PPP1R8-silenced U251 cells using CRISPR/Cas9 technology</p>Results<p>Thirty-six IERGs were associated with GBM outcomes, with 20 linked to poor survival and 16 to better outcomes. …”

Table 4_Immune intrinsic escape signature stratifies prognosis, characterizes the tumor immune microenvironment, and identifies tumorigenic PPP1R8 in glioblastoma multiforme patien... by Ran Du (552530)

“…TIME analysis was carried out using multiple deconvolution algorithms. Additionally, functional assays including CCK8, cell cycle, and apoptosis assays were conducted on PPP1R8-silenced U251 cells using CRISPR/Cas9 technology</p>Results<p>Thirty-six IERGs were associated with GBM outcomes, with 20 linked to poor survival and 16 to better outcomes. …”

Image 11_Immune intrinsic escape signature stratifies prognosis, characterizes the tumor immune microenvironment, and identifies tumorigenic PPP1R8 in glioblastoma multiforme patie... by Ran Du (552530)

“…TIME analysis was carried out using multiple deconvolution algorithms. Additionally, functional assays including CCK8, cell cycle, and apoptosis assays were conducted on PPP1R8-silenced U251 cells using CRISPR/Cas9 technology</p>Results<p>Thirty-six IERGs were associated with GBM outcomes, with 20 linked to poor survival and 16 to better outcomes. …”

Table 2_Identification and verification of biomarkers associated with neutrophils in acute myocardial infarction: integrated analysis of bulk RNA-seq, expression quantitative trait... by Guoqing Liu (93712)

“…A prediction model was constructed based on three hub neutrophil coexpressed genes in AMI, and the results revealed good accuracy. …”