<b>Opti2Phase</b>: Python scripts for two-stage focal reducer by Morgan Najera (21540776)

“…<p dir="ltr"><b>Opti2Phase: Python Scripts for Two-Stage Focal Reducer Design</b></p><p dir="ltr">The folder <b>Opti2Phase</b> contains the Python scripts used to generate the results presented in the manuscript. …”

Available functions in the phase-shifting package. by Raul Castañeda (13932971)

Available functions in the phase reconstruction package. by Raul Castañeda (13932971)

Verification of the in-line PS function. by Raul Castañeda (13932971)

Available functions in the utility package. by Raul Castañeda (13932971)

Available functions in the numerical propagation package. by Raul Castañeda (13932971)

Example of the CNF function for off-axis DHM holograms recorded in a non-telecentric configuration. by Raul Castañeda (13932971)

Average quality scores of the models of the analysis set as a function of the <i>w</i>_<i>SP</i> with which the DOPE potential has been included in the objective function... by Giacomo Janson (8138517)

3D modeling qualities of the AS single-template models built by including DOPE in the objective function of MODELLER. by Giacomo Janson (8138517)

3D modeling qualities of the AM multiple-template models built by including DOPE in the objective function of MODELLER. by Giacomo Janson (8138517)

Example of the fully-compensated phase reconstruction package for off-axis DHM holograms recorded in telecentric configuration. by Raul Castañeda (13932971)

Example of use of the slightly off-axis strategies. by Raul Castañeda (13932971)

Design and implementation of DelaySSA. The input data for DelaySSA are reaction information, initial states, parameters and delays. Combining these into the simulation function, th... by Ziyan Jin (21021976)

Modeling with uniform <i>σ</i> values. by Giacomo Janson (8138517)

Effect of <i>|Δd</i>_<i>n</i><i>|</i> perturbation on 3D modeling. by Giacomo Janson (8138517)

Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling by Giacomo Janson (8138517)

“…The 3D model building phase of this methodology is critical for obtaining an accurate and biologically useful prediction. …”

Comparison of scores obtained by our interpenetration and scoring algorithm (ISA) and ROSETTA for a subset of structures. by Kevin Sawade (16726527)

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…<p dir="ltr">The <i>zip</i> file contains the code for the functional excitation-inhibition ratio (fE/I) and theta-gamma (θ-γ) phase-amplitude coupling (PAC) analyses described in the paper titled "<b>Hippocampal and cortical activity reflect early </b><b>hyperexcitability</b><b> in an Alzheimer's mouse model</b>" submitted to <i>Brain Communications</i> in April 2025.…”

<b>AI for imaging plant stress in invasive species </b>(dataset from the article https://doi.org/10.1093/aob/mcaf043) by Erola Fenollosa (20977421)

“…<p dir="ltr">This dataset contains the data used in the article <a href="https://academic.oup.com/aob/advance-article/doi/10.1093/aob/mcaf043/8074229" rel="noreferrer" target="_blank">"Machine Learning and digital Imaging for Spatiotemporal Monitoring of Stress Dynamics in the clonal plant Carpobrotus edulis: Uncovering a Functional Mosaic</a>", which includes the complete set of collected leaf images, image features (predictors) and response variables used to train machine learning regression algorithms.…”

Landscape17 by Vlad Carare (22092515)

“…In general, there may be multiple transition states between two minima, and there may be gaps in the connection profile. The two-phase procedure is applied until a complete discrete path is obtained, using the missing connection algorithm to propose new pairs of minima for additional searches.…”