Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry by Wei Liu (20030)

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Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry by Wei Liu (20030)

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Unraveling of Phosphotyrosine Signaling Complexes Associated with T Cell Exhaustion Using Multiplex Co-Fractionation/Mass Spectrometry by Wei Liu (20030)

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Performance comparison of MFPSP with existing predictors on independent test data. by Chao Wang (146527)

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Contrast enhancement of digital images using dragonfly algorithm by Soumyajit Saha (19726163)

“…Comparisons with state-of-art methods ensure the superiority of the proposed algorithm. The Python implementation of the proposed approach is available in this <a href="https://github.com/somnath796/DA_contrast_enhancement" target="_blank">Github repository</a>.…”

Table 2_Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio.xlsx by Ibukun John Abulude (21084308)

“…By applying Markov Cluster Algorithm and AlphaFold-Multimer to analyze the protein network and interaction partners of the AP-PEPs, we predicted high-confidence protein-protein interactions and two structurally similar but unique novel protein complexes formed among proteins of the Bd2209-Bd2212 and Bd2723-Bd2726 operons. …”

Table 1_Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio.xlsx by Ibukun John Abulude (21084308)

“…By applying Markov Cluster Algorithm and AlphaFold-Multimer to analyze the protein network and interaction partners of the AP-PEPs, we predicted high-confidence protein-protein interactions and two structurally similar but unique novel protein complexes formed among proteins of the Bd2209-Bd2212 and Bd2723-Bd2726 operons. …”

Prediction scores of directed PTM-PPIs. by Aimilia-Christina Vagiona (17584758)

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Nodes of the hPIN. by Aimilia-Christina Vagiona (17584758)

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Enrichment analysis of predicted effectors. by Aimilia-Christina Vagiona (17584758)

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Properties of the hPIN. by Aimilia-Christina Vagiona (17584758)

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Training dataset of experimentally known phosphorylation and dephosphorylation PPIs. by Aimilia-Christina Vagiona (17584758)

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ROC curves and AUC scores to compare the classifier performance of the different data sets containing various number of features. by Aimilia-Christina Vagiona (17584758)

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Components of a critical PPI network involved in SCA1 pathogenesis. by Aimilia-Christina Vagiona (17584758)

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Edges of the hPIN. by Aimilia-Christina Vagiona (17584758)

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Evaluation of the model. by Aimilia-Christina Vagiona (17584758)

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Properties of the 14 features that were used for building the model. by Aimilia-Christina Vagiona (17584758)

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Structure of the work presented in this manuscript. by Aimilia-Christina Vagiona (17584758)

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Confirmation of hub MitoDEGs expression and association with cardiac function in MI mice. by Wenlong Kuang (20485167)

Data Sheet 1_Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio.csv by Ibukun John Abulude (21084308)

“…By applying Markov Cluster Algorithm and AlphaFold-Multimer to analyze the protein network and interaction partners of the AP-PEPs, we predicted high-confidence protein-protein interactions and two structurally similar but unique novel protein complexes formed among proteins of the Bd2209-Bd2212 and Bd2723-Bd2726 operons. …”