Table1_Identification of lung adenocarcinoma subtypes and predictive signature for prognosis, immune features, and immunotherapy based on immune checkpoint genes.XLSX by Linbin Hua (15442976)

“…The weighted gene co-expression network analysis (WGCNA) was used to obtain the gene modules closely related to the score and two different LUAD clusters were identified based on these module genes by the Non-negative Matrix Factorization (NMF) Algorithm. …”

Table3_Identification of lung adenocarcinoma subtypes and predictive signature for prognosis, immune features, and immunotherapy based on immune checkpoint genes.DOCX by Linbin Hua (15442976)

“…The weighted gene co-expression network analysis (WGCNA) was used to obtain the gene modules closely related to the score and two different LUAD clusters were identified based on these module genes by the Non-negative Matrix Factorization (NMF) Algorithm. …”

Data_Sheet_1_Peripheral Nerve Activation Evokes Machine-Learnable Signals in the Dorsal Column Nuclei.pdf by Alastair J. Loutit (6489977)

“…Our objective was to investigate the usefulness of high-frequency (HF) and low-frequency (LF) DCN signal features (SFs) in predicting the nerve from which signals were evoked. …”

Image1_Identification of lung adenocarcinoma subtypes and predictive signature for prognosis, immune features, and immunotherapy based on immune checkpoint genes.pdf by Linbin Hua (15442976)

“…The weighted gene co-expression network analysis (WGCNA) was used to obtain the gene modules closely related to the score and two different LUAD clusters were identified based on these module genes by the Non-negative Matrix Factorization (NMF) Algorithm. …”

DataSheet1_Exploring the bi-directional relationship and shared genes between depression and stroke via NHANES and bioinformatic analysis.docx by Zhanghuan Yang (14951461)

“…GO, KEGG, Metascape, GeneMANIA, NetworkAnalyst, and DGIdb were used for functional enrichment, pathway analysis, regulatory network analysis, and candidate drugs analysis. ssGSEA algorithm was used to analyze the immune infiltration.…”

DataSheet1_An Inflammatory Response Related Gene Signature Associated with Survival Outcome and Gemcitabine Response in Patients with Pancreatic Ductal Adenocarcinoma.xlsx by Zhijun Xiao (4926139)

“…The GDSC database, pRRophetic algorithm, and connectivity map analysis were used to predict gemcitabine sensitivity and identify potential drugs for the treatment of PDAC. …”

DataSheet2_An Inflammatory Response Related Gene Signature Associated with Survival Outcome and Gemcitabine Response in Patients with Pancreatic Ductal Adenocarcinoma.docx by Zhijun Xiao (4926139)

“…The GDSC database, pRRophetic algorithm, and connectivity map analysis were used to predict gemcitabine sensitivity and identify potential drugs for the treatment of PDAC. …”

DataSheet_1_Characterization of the microenvironment of diabetic foot ulcers and potential drug identification based on scRNA-seq.zip by Yao Li (154923)

“…Finally, immunofluorescence technology was used to detect the cell-related markers of the DFUs microenvironment, and qPCR was used to detect the expression of drug targets in DFUs.…”

Supplementary Figures of Association of Gut Microbiota during Early Pregnancy with Risk of Incident Gestational Diabetes Mellitus by Ping Hu (9609038)

“…S4</b> <b>Correlation networks of all 274 genera in GDM and control group. </b>SparCC algorithm was used to assess correlation coefficients and statistical significance. …”

DataSheet_1_Prognostic and Predictive Value of m6A “Eraser” Related Gene Signature in Gastric Cancer.docx by Xin Xu (11989)

“…Furthermore, m6A “eraser” might play a functional role in GC. The expression of m6A “eraser” leads to changes in tumor immune microenvironment.…”

DataSheet1_PSF toolkit: an R package for pathway curation and topology-aware analysis.PDF by Siras Hakobyan (6638330)

“…The results demonstrate that the algorithm can effectively identify ORA enriched pathways while providing more detailed branch-level information. …”

Video2_Streamlined single-molecule RNA-FISH of core clock mRNAs in clock neurons in whole mount Drosophila brains.AVI by Ye Yuan (531126)

“…Further, this method can open mechanistic and functional studies into how spatiotemporal localization of clock mRNAs affect circadian rhythms.…”

Table_1_Integrated analysis of endoplasmic reticulum stress regulators’ expression identifies distinct subtypes of autism spectrum disorder.XLSX by Yanjun Li (46396)

“…Furthermore, the consensus clustering algorithm was performed to cluster the ASD patients, and there were two ASD subclusters. …”

Table1_An anoikis-based signature for predicting prognosis in hepatocellular carcinoma with machine learning.xlsx by Zhang Guizhen (14325240)

“…Moreover, The XGBoost algorithm verified that DAP3 was an important risk score contributor. …”

Image_1_Integrated analysis of endoplasmic reticulum stress regulators’ expression identifies distinct subtypes of autism spectrum disorder.TIF by Yanjun Li (46396)

“…Furthermore, the consensus clustering algorithm was performed to cluster the ASD patients, and there were two ASD subclusters. …”

Image 1_Identification and validation of three tumor suppressors associated with the immune response of acute myeloid leukemia.tif by Yueyuan Pan (20349465)

“…CIBERSORT and the ESTIMATE algorithm were used to assess the correlation between hub genes and the immune microenvironment of AML. …”

Table_2_Association of peripheral B cells and delirium: combined single-cell sequencing and Mendelian randomization analysis.DOCX by Siyou Tan (17906267)

“…PBMC subsets and cellular markers were defined after downscaling and clustering by the Harmony algorithm to identify characteristic subsets in the context of inflammatory stress. …”

Table_1_Association of peripheral B cells and delirium: combined single-cell sequencing and Mendelian randomization analysis.DOCX by Siyou Tan (17906267)

“…PBMC subsets and cellular markers were defined after downscaling and clustering by the Harmony algorithm to identify characteristic subsets in the context of inflammatory stress. …”

Table2_An anoikis-based signature for predicting prognosis in hepatocellular carcinoma with machine learning.xlsx by Zhang Guizhen (14325240)

“…Moreover, The XGBoost algorithm verified that DAP3 was an important risk score contributor. …”

Data_Sheet_2_Whole-Genome Shotgun Sequencing for Nasopharyngeal Microbiome in Pre-school Children With Recurrent Wheezing.xlsx by Yuping Song (2504545)

“…Sequence reads were analyzed by MetaPhlAn2 and HUMAnN2 algorithm for taxonomic and functional identification. …”