Reward function related parameters. حسب Honglei Pang (22693724)

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Modular architecture design of PyNoetic showing all its constituent functions. حسب Gursimran Singh (575288)

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The results of LASSO regression algorithm. حسب Xue Fu (549661)

PATH has state-of-the-art performance versus previous binding affinity prediction algorithms. حسب Yuxi Long (11024307)

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Two protein-ligand complexes shown with their persistence fingerprint. حسب Yuxi Long (11024307)

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Immune infiltration analysis by CIBERSORT algorithm. حسب Lanying Shen (22755930)

The GOR4 and SOPMA algorithm findings. حسب Ahmad Abdullah Mahdeen (19704401)

2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome حسب Olga Botvinnik (20571431)

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Top-ranked hub genes identified by 5 cytoHubba algorithms. حسب Jun Li (6494)

PATH (with persistence fingerprint) runs significantly faster than TNet-BP, a representative binding affinity prediction algorithm that uses persistent homology, on larger protein-... حسب Yuxi Long (11024307)

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Visualization by PaCMAP [52] shows that persistence fingerprint clusters protein-ligand complexes with similar binding affinity reasonably well, even beyond the training dataset (P... حسب Yuxi Long (11024307)

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MEDOC: A Fast, Scalable, and Mathematically Exact Algorithm for the Site-Specific Prediction of the Protonation Degree in Large Disordered Proteins حسب Martin J. Fossat (3714079)

الموضوعات: "…mathematically exact algorithm…"

(a-b) The LASSO algorithm was used for hyperparameter tuning and identification of the important predictive features. حسب Devi Soorya Narayana Sasikumar (22331743)

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Performance of TNet-BP and PATH⁺ on the PDBBind v2020 refined set shows that PATH⁺ achieves similar performance with TNet-BP while having three orders fewer f... حسب Yuxi Long (11024307)

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PATH⁺ explains tighter binding of carbonic anhydrase II by brinzolamide. حسب Yuxi Long (11024307)

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An overview of PATH⁺. حسب Yuxi Long (11024307)

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The 10 features captured by persistence fingerprint. حسب Yuxi Long (11024307)

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^aTwo HIV-1 protease mutants bound to inhibitor darunavir (G48V: PDB ID 3cyw [81] & L90M: PDB ID 2f81 [82]). حسب Yuxi Long (11024307)

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Scatter plots of PATH⁺ and our implementation of TNet-BP’s predictions on a held-out, test subset of PDBBind v2020 refined set for one run (90:10 train:test split ratio,... حسب Yuxi Long (11024307)

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PATH⁺ correctly predicted a weaker binding affinity for HIV-1 protease with the drug-resistant G48V mutation (right, experimental kcal/mol, PDB ID: 3cyw [81]) bound to d... حسب Yuxi Long (11024307)

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