Default cell detection parameters. by Adam L. Tyson (10892822)

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Assignment of signal to individual cell candidates in the third dimension. Saggital sections (i.e. orthogonal to acquisition) shown. by Adam L. Tyson (10892822)

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Total number of cells in each region, per brain, projecting to layer 2/3 neurons in primary visual cortex. by Adam L. Tyson (10892822)

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Architecture of the 3D ResNet. by Adam L. Tyson (10892822)

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Overview of the initial cell candidate detection steps, from raw data to a cuboid of data fed into the classification network. by Adam L. Tyson (10892822)

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Illustration of the cell detection process. by Adam L. Tyson (10892822)

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Architecture of the bottleneck 3D ResNet. by Adam L. Tyson (10892822)

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Simplified schematic diagram of the serial two-photon microscope and data acquisition process. by Adam L. Tyson (10892822)

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Cell classification. by Adam L. Tyson (10892822)

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visualization 1.avi by Yunhai Zhang (6749174)

Exploration of Bioinspired Algorithms in Multithreshold Image Segmentation for Medical Images by Fernando Ramírez sarmiento (18359679)

“…<p dir="ltr">The brain is essential for human functioning, but it is vulnerable to multiple pathologies, including strokes, brain tumors, and other disorders that compromise its structure and function. …”

Simultaneous point-spread function optimization in two optical arms with a single deformable mirror. by nikita vladimirov (9726569)

“…The two point-spread functions (PSFs) correspond to the same fluorescent bead, as seen in two orthogonal views of the microscope. …”

Data_Sheet_1_Processing Pipeline for Atlas-Based Imaging Data Analysis of Structural and Functional Mouse Brain MRI (AIDAmri).docx by Niklas Pallast (6796196)

“…The AIDAmri pipeline includes automated pre-processing steps, such as raw data conversion, skull-stripping and bias-field correction as well as image registration with the Allen Mouse Brain Reference Atlas (ARA). Following a modular structure developed in Python scripting language, the pipeline integrates established and newly developed algorithms. …”

Data_Sheet_2_Processing Pipeline for Atlas-Based Imaging Data Analysis of Structural and Functional Mouse Brain MRI (AIDAmri).pdf by Niklas Pallast (6796196)

“…The AIDAmri pipeline includes automated pre-processing steps, such as raw data conversion, skull-stripping and bias-field correction as well as image registration with the Allen Mouse Brain Reference Atlas (ARA). Following a modular structure developed in Python scripting language, the pipeline integrates established and newly developed algorithms. …”

Fractal dimension of cortical functional connectivity networks & severity of disorders of consciousness by Thomas F. Varley (8446899)

“…<div><p>Recent evidence suggests that the quantity and quality of conscious experience may be a function of the complexity of activity in the brain and that consciousness emerges in a critical zone between low and high-entropy states. …”

Spreadsheets containing the graph parameters, brain areas and network values. by Jafar Zamani (12902504)

The experimental geometric placement adopted to assess metal artifact reduction employing the new denoising convolutional neural network metal artifact reduction hybrid reconstruct... by Tsutomu Gomi (7382183)

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Comparisons among the denoising convolutional neural network metal artifact reduction hybrid reconstruction (DnCNN-MARHR) algorithm and the traditional reconstruction algorithms wi... by Tsutomu Gomi (7382183)

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Phase diagram for global archetype model as a function of temperature. by Giulio Ruffini (383994)

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Studies with ML classification algorithms for distinguishing ASD and ADHD groups described in subsection 1.2. by Caroline L. Alves (14271413)