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algorithm python » algorithm within (Expand Search), algorithms within (Expand Search), algorithm both (Expand Search)
algorithm steps » algorithm shows (Expand Search), algorithm models (Expand Search)
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algorithm etc » algorithm _ (Expand Search), algorithm b (Expand Search), algorithm a (Expand Search)
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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data
Published 2019“…Despite its importance, no standardized computational platform is currently available to generate species-specific biomass objective functions in a data-driven, unbiased fashion. To fill this gap in the metabolic modeling software ecosystem, we implemented BOFdat, a Python package for the definition of a <b>B</b>iomass <b>O</b>bjective <b>F</b>unction from experimental <b>dat</b>a. …”
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Data_Sheet_1_Modified Particle Swarm Optimization Algorithms for the Generation of Stable Structures of Carbon Clusters, Cn (n = 3–6, 10).doc
Published 2019“…<p>Particle Swarm Optimization (PSO), a population based technique for stochastic search in a multidimensional space, has so far been employed successfully for solving a variety of optimization problems including many multifaceted problems, where other popular methods like steepest descent, gradient descent, conjugate gradient, Newton method, etc. do not give satisfactory results. Herein, we propose a modified PSO algorithm for unbiased global minima search by integrating with density functional theory which turns out to be superior to the other evolutionary methods such as simulated annealing, basin hopping and genetic algorithm. …”
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Data_Sheet_2_Modified Particle Swarm Optimization Algorithms for the Generation of Stable Structures of Carbon Clusters, Cn (n = 3–6, 10).doc
Published 2019“…<p>Particle Swarm Optimization (PSO), a population based technique for stochastic search in a multidimensional space, has so far been employed successfully for solving a variety of optimization problems including many multifaceted problems, where other popular methods like steepest descent, gradient descent, conjugate gradient, Newton method, etc. do not give satisfactory results. Herein, we propose a modified PSO algorithm for unbiased global minima search by integrating with density functional theory which turns out to be superior to the other evolutionary methods such as simulated annealing, basin hopping and genetic algorithm. …”
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Performance of the smooth-index algorithm for matrices with different densities.
Published 2024Subjects: -
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Bespoke software controls the sorter GUI and reports on instrument status to the user.
Published 2024Subjects: -
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Statistic results between the proposed algorithm and other metaheuristic algorithms.
Published 2025Subjects: -
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The target gravitational function and the repulsion function are added.
Published 2025Subjects: “…target gravitational function…”
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Predictive Mixing for Density Functional Theory (and Other Fixed-Point Problems)
Published 2021Subjects: -
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