Pyrho Validation - Check re-gridded periodic data حسب Jimmy Shen (12664675)

Python code, input data, and outputs of Fourier analysis and Dynamic Time Warping from McGlasson et al. حسب Riley McGlasson (13876874)

"…</p> <h4><strong>Python Function Files:</strong></h4> <p>radarfuncs.py: Holds three functions used for FFT and DTW analysis.…"

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model حسب Marina Diachenko (19739092)

"…Measurement of excitation-inhibition ratio in autism spectrum disorder using critical brain dynamics. <i>Scientific reports</i>, <i>10</i>(1), 9195. https://doi.org/10.1038/s41598-020-65500-4</p><p dir="ltr">Diachenko, M., Sharma, A., Smit, D. …"

COI reference sequences from BOLD DB حسب John Sundh (12853901)

"…<br>The file bold_clustered.sintax.fasta.gz is directly compatible with the SINTAX algorithm in vsearch while files bold_clustered.assignTaxonomy.fasta.gz and bold_clustered.addSpecies.fasta.gz are directly compatible with the assignTaxonomy and addSpecies functions from DADA2, respectively. …"

Code and Data for 'Fabrication and testing of lensed fiber optic probes for distance sensing using common path low coherence interferometry' حسب Radu Stancu (21165068)

"…</p><p dir="ltr">Running the code</p><p>----------------</p><p dir="ltr">Code was tested with Python 3.10.14</p><p dir="ltr">Packages requirements (tested version shown):</p><p dir="ltr">numpy 1.26.4</p><p dir="ltr">matplotlib 3.8.4</p><p dir="ltr">scipy 1.13.1</p><p dir="ltr">opencv-python 4.9.0.80</p><p dir="ltr">PIL 10.3.0</p>…"

Known compounds and new lessons: structural and electronic basis of flavonoid-based bioactivities حسب Rohan J. Meshram (6563189)

"…Abbreviations2′HFN-2′</p><p>hydroxy flavonone</p>2D<p>2 dimension</p>3D<p>3 dimension</p>3H7MF<p>3-hydroxy-7-methoxy flavone</p>4′HFN-4′<p>hydroxy flavonone</p>4′MF- 4′<p>methoxy flavone</p>7HFN<p>7-hydroxy flavonone</p>CHARMM<p>Chemistry at Harvard Macromolecular Mechanics</p>COX<p>cyclooxygenase</p>COX-1<p>cyclooxygenase-1</p>COX-2<p>cyclooxygenase-2</p>DM<p>dipole moment</p>DPPH- 2, 2<p>diphenyl-1-picryl hydrazine</p>EA<p>electron affinities</p>EGFR<p>epidermal growth factor receptor</p>E-HOMO<p>Highest occupied molecular orbital energy</p>E-LUMO<p>Lowest unoccupied molecular orbital energy</p>EPA<p>eicosapentaenoic acid</p>FROG2<p>FRee Online druG conformation generation</p>GA<p>Genetic Algorithm</p>GROMACS<p>GROningen MAchine for Chemical Simulations</p>HOMO<p>Highest occupied molecular orbital</p>IP<p>Ionization potential</p>LOMO<p>Lowest unoccupied molecular orbital</p>MD<p>Molecular dynamics</p>MO<p>Molecular orbital</p>NAMD<p>Nanoscale Molecular Dynamics</p>NSAIDs<p>Non-Steroidal Anti Inflammatory Drugs</p>Ns<p>nanoseconds</p>NVE<p>Ensemble-constant-energy, constant-volume, Constant particle ensemble</p>PDB-ID<p>Protein Data Bank Identifier</p>PME<p>Particle Mesh Ewald</p>PyRX<p>Python Prescription</p>RMSD<p>Root-Mean-Square Deviation</p>RMSF<p>Root-Mean-Square Fluctuation</p>RLS<p>reactive lipid species</p>ROS<p>Reactive Oxygen Species</p>SASA<p>solvent accessible surface area</p>SMILES<p>simplified molecular-input line-entry system</p>SOR<p>superoxide anion radical</p>UFF<p>Universal force field</p>VEGF<p>vascular endothelial growth factor</p>VEGFR<p>vascular endothelial growth factor receptor</p>VMD<p>Visual molecular dynamics</p><p></p> <p>hydroxy flavonone</p> <p>2 dimension</p> <p>3 dimension</p> <p>3-hydroxy-7-methoxy flavone</p> <p>hydroxy flavonone</p> <p>methoxy flavone</p> <p>7-hydroxy flavonone</p> <p>Chemistry at Harvard Macromolecular Mechanics</p> <p>cyclooxygenase</p> <p>cyclooxygenase-1</p> <p>cyclooxygenase-2</p> <p>dipole moment</p> <p>diphenyl-1-picryl hydrazine</p> <p>electron affinities</p> <p>epidermal growth factor receptor</p> <p>Highest occupied molecular orbital energy</p> <p>Lowest unoccupied molecular orbital energy</p> <p>eicosapentaenoic acid</p> <p>FRee Online druG conformation generation</p> <p>Genetic Algorithm</p> <p>GROningen MAchine for Chemical Simulations</p> <p>Highest occupied molecular orbital</p> <p>Ionization potential</p> <p>Lowest unoccupied molecular orbital</p> <p>Molecular dynamics</p> <p>Molecular orbital</p> <p>Nanoscale Molecular Dynamics</p> <p>Non-Steroidal Anti Inflammatory Drugs</p> <p>nanoseconds</p> <p>Ensemble-constant-energy, constant-volume, Constant particle ensemble</p> <p>Protein Data Bank Identifier</p> <p>Particle Mesh Ewald</p> <p>Python Prescription</p> <p>Root-Mean-Square Deviation</p> <p>Root-Mean-Square Fluctuation</p> <p>reactive lipid species</p> <p>Reactive Oxygen Species</p> <p>solvent accessible surface area</p> <p>simplified molecular-input line-entry system</p> <p>superoxide anion radical</p> <p>Universal force field</p> <p>vascular endothelial growth factor</p> <p>vascular endothelial growth factor receptor</p> <p>Visual molecular dynamics</p> <p>Communicated by Ramaswamy H. …"

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> حسب Shubham Pawar (22471285)

"…/cluster_module/output_data/et_cells_glasgow_epsg27700_score_custer_all.gpkg')<br><br>perception_columns = [<br> 'beautiful_ID', 'boring_ID', 'safer_ID',<br> 'depressing_ID', 'wealthier_ID', 'livelier_ID'<br>]<br><br>fig, axes = plt.subplots(2, 3, figsize=(15, 8))<br>axes = axes.flatten()<br><br>cmap = 'tab20'<br><br>for i, col in enumerate(perception_columns):<br> ax = axes[i]<br> title = col.split('_')[0].capitalize()<br> <br> gdf.plot(<br> column=col,<br> ax=ax,<br> cmap=cmap,<br> legend=False,<br> linewidth=0,<br> edgecolor='none'<br> )<br> <br> ax.set_title(title, fontsize=14, fontweight='bold')<br> ax.set_xticks([])<br> ax.set_yticks([])<br> ax.set_aspect('equal')<br><br>plt.tight_layout(pad=1.0)<br>plt.show()<br></pre></pre><h4>Figure 9: Average Perception Scores by Neighbourhood</h4><p dir="ltr">Average perception score for each delineated neighbourhood.…"

Barro Colorado Island 50-ha plot aerial photogrammetry orthomosaics and digital surface models for 2018-2023: Globally and locally aligned time series. حسب Vicente Vasquez (13550731)

"…Institute. https://doi.org/10.25573/data.14417933</p><p dir="ltr">Agisoft LLC. (n.d.). Metashape Python Reference Version (release 2.0.4). <i>agisoft.com</i>. …"

MCCN Case Study 2 - Spatial projection via modelled data حسب Donald Hobern (21435904)

"…This repository contains Jupyter notebooks to demonstrate the functionality of the MCCN data cube components.</p><p dir="ltr">The dataset contains input files for the case study (source_data), RO-Crate metadata (ro-crate-metadata.json), results from the case study (results), and Jupyter Notebook (MCCN-CASE 2.ipynb)</p><h4><b>Research Activity Identifier (RAiD)</b></h4><p dir="ltr">RAiD: https://doi.org/10.26292/8679d473</p><h4><b>Case Studies</b></h4><p dir="ltr">This repository contains code and sample data for the following case studies. …"