S1 Dataset - by Yuh-Chin T. Huang (17867207)

Subjects:

Schematics for gmxapi operations. by M. Eric Irrgang (4487278)

gmxapi usage examples. by M. Eric Irrgang (4487278)

Dataset of networks used in assessing the Troika algorithm for clique partitioning and community detection by Samin Aref (4683934)

“…Each network is provided in .gml format or .pkl format which can be read into a networkX graph object using standard functions from the networkX library in Python. …”

MSEs for the adaptive filtering algorithms by using hyperbolic functions. by Sihai Guan (11547518)

MSEs for the adaptive filtering algorithms by using hyperbolic functions. by Sihai Guan (11547518)

Curves of sigmoid functions used in our proposed algorithm. by Binh Thanh Dang (12368831)

“…<p>Curves of sigmoid functions used in our proposed algorithm.</p>…”

MSEs for the adaptive filtering algorithms by using hyperbolic functions. by Sihai Guan (11547518)

MSEs for the adaptive filtering algorithms by using hyperbolic functions. by Sihai Guan (11547518)

Comparison of algorithms in two cases. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

Flow of the NSGA-II algorithm. by Yi Tao (178829)

Subjects: “…evolutionary genetic algorithm…”

ADT: A Generalized Algorithm and Program for Beyond Born–Oppenheimer Equations of “<i>N</i>” Dimensional Sub-Hilbert Space by Koushik Naskar (7510592)

“…The “ADT” program can be efficiently used to (a) formulate analytic functional forms of differential equations for ADT angles and diabatic potential energy matrix and (b) solve the set of coupled differential equations numerically to evaluate ADT angles, residue due to singularity­(ies), ADT matrices, and finally, diabatic potential energy surfaces (PESs). …”

An expectation-maximization algorithm for finding noninvadable stationary states. by Robert Marsland (8616483)

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

Discovery of Protein Modifications Using Differential Tandem Mass Spectrometry Proteomics by Paolo Cifani (1575613)

“…Termed SAMPEI for spectral alignment-based modified peptide identification, this open-source algorithm is designed for the discovery of functional protein and peptide signaling modifications, without prior knowledge of their identities. …”

The used test functions in the evaluation. by Xuan Chen (158617)

Example of use of the slightly off-axis strategies. by Raul Castañeda (13932971)

Flowchart for the genetic algorithm used in this article. by Behnam Kia (6111551)

Design and implementation of DelaySSA. The input data for DelaySSA are reaction information, initial states, parameters and delays. Combining these into the simulation function, th... by Ziyan Jin (21021976)

Eight commonly used benchmark functions. by Guangwei Liu (181992)

“…The proposed algorithm was evaluated on eight standard benchmark functions, CEC2019 benchmark functions, four engineering design problems, and a PID parameter optimization problem. …”