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where functional » whose functional (Expand Search), severe functional (Expand Search), three functional (Expand Search)
within function » fibrin function (Expand Search), protein function (Expand Search), catenin function (Expand Search)
python function » protein function (Expand Search)
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<b>Opti2Phase</b>: Python scripts for two-stage focal reducer
Published 2025“…</li></ul><p dir="ltr">The scripts rely on the following Python packages. Where available, repository links are provided:</p><ol><li><b>NumPy</b>, version 1.22.1</li><li><b>SciPy</b>, version 1.7.3</li><li><b>PyGAD</b>, version 3.0.1 — https://pygad.readthedocs.io/en/latest/#</li><li><b>bees-algorithm</b>, version 1.0.2 — https://pypi.org/project/bees-algorithm</li><li><b>KrakenOS</b>, version 1.0.0.19 — https://github.com/Garchupiter/Kraken-Optical-Simulator</li><li><b>matplotlib</b>, version 3.5.2</li></ol><p dir="ltr">All scripts are modular and organized to reflect the design stages described in the manuscript.…”
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An expectation-maximization algorithm for finding noninvadable stationary states.
Published 2020“…<p><i>(a)</i> Noninvadable states by definition can only exist in the region Ω of resource space where the growth rate <i>dN</i><sub><i>i</i></sub>/<i>dt</i> of each species <i>i</i> is zero or negative. …”
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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…<div>This directory contains Python 3 scripts implementing the Trajectory Adaptive Multilevel Sampling algorithm (TAMS), a variant of Adaptive Multilevel Splitting (AMS), for the study of rare events. …”
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Experiment 2D and 5D: Progressive Sample Scaling Algorithm To Solve Many-Affine BBOB Functions.
Published 2024“…</p><p dir="ltr">In the Sample stage, the algorithm generates a combination of equidistant points within the problem's boundaries, where each point corresponds to a variable array with a fixed dimension size. …”
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Multi-scale detection of hierarchical community architecture in structural and functional brain networks
Published 2019“…In their simplest application, community detection algorithms are agnostic to the presence of community hierarchies: clusters embedded within clusters of other clusters. …”
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Multidomain, Automated Photopatterning of DNA-functionalized Hydrogels (MAPDH).
Published 2024“…<b>B)</b> Pseudocode for MAPDH in Python. The algorithm takes as input the vials that will be flowed through the patterning chamber. …”
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Wav2DDK: An automated DDK estimation algorithm (Kadambi et al., 2023)
Published 2023“…<p><strong>Purpose:</strong> Oral diadochokinesis is a useful task in assessment of speech motor function in the context of neurological disease. Remote collection of speech tasks provides a convenient alternative to in-clinic visits, but scoring these assessments can be a laborious process for clinicians. …”
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Python-Based Algorithm for Estimating NRTL Model Parameters with UNIFAC Model Simulation Results
Published 2025“…This algorithm conducts a series of procedures: (1) fragmentation of the molecules into functional groups from SMILES, (2) calculation of activity coefficients under predetermined temperature and mole fraction conditions by employing universal quasi-chemical functional group activity coefficient (UNIFAC) model, and (3) regression of NRTL model parameters by employing UNIFAC model simulation results in the differential evolution algorithm (DEA) and Nelder–Mead method (NMM). …”
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