Toward effortless digital histopathology through cloud-based multi virtual staining: Proof-of-concept. by Mehdi Ounissi (22470332)

PLOS One data. by Ayşenur Eser (21713911)

“…<div><p>Automated detection of emotional states through brain-computer interfaces (BCIs) offers significant potential for enhancing user experiences and personalizing services across domains such as mental health, adaptive learning and interactive entertainment. Within this advancing field, the aim of this study was to test the feasibility of a functional near-infrared spectroscopy (fNIRS)-based BCI system for accurate prediction and objective identification of three fundamental emotional states that involved positive, negative and neutral conditions. …”

Pan-cancer expression characteristics of SEPN1 and its association with the TME. by Zisong Wang (8815727)

Overview of MINT. by Gabriel Matías Lorenz (21094672)

“…<p>A: List of main MINT functions. B: MINT provides multivariate information theoretic functions to quantify the amount of information that single neurons or neural populations carry about task-relevant variables (e.g., sensory stimuli or behavioral choices). …”

Correlation of <i>VDAC1</i>, <i>HSPA8</i>, <i>SOD1</i>, <i>HSPA9</i>, <i>TXN</i>, and <i>SNCA</i> with immune cell infiltration in sepsis-induced ALI. by Xue Fu (549661)

Brain-in-the-Loop Learning for Intelligent Vehicle Decision-Making by Xiaofei Zhang (16483224)

“…In this paper, we utilize functional near-infrared spectroscopy (fNIRS) signals as real-time human risk-perception feedback to establish a brain-in-the-loop (BiTL) trained artificial intelligence algorithm for decision-making. …”

Examples of model selection methods for the PHMM. by Tianshu Li (1527088)

“…<i>Left panel:</i> LL on validation sets as a function of <i>m</i>. The black curves show the average log-likelihoods (across initial guesses) of all models whose algorithm converged to a solution during training (vertical bars display one standard deviation across 100 different initial guesses for the parameter values). …”

Landscape17 by Vlad Carare (22092515)

“…</p><h3>Density functional theory calculations</h3><p dir="ltr">The reference potential energy landscapes were computed using density functional theory with the ωB97x hybrid-energy exchange correlation functional and a 6-31G(d) basis set within Psi4. …”

CSPP instance by peixiang wang (19499344)

“…</b></p><p dir="ltr">Its primary function is to create structured datasets that simulate container terminal operations, which can then be used for developing, testing, and benchmarking optimization algorithms (e.g., for yard stacking strategies, vessel stowage planning).…”

Artificial Neural Network Model for Predicting the Viscosity of Crosslinked Polyacrylamide and Polyethylenimine Polymer Gel for Oilfield Water Control by S M Safayet Aziz (20832236)

“…The model was trained using the Levenberg-Marquardt algorithm. The hidden layer uses the tangent sigmoid (Tansig) activation function, and the output layer employs a linear (Purelin) activation function. …”

LDD microtubule-based nucleation naturally results in a local microtubule density-dependent fraction of microtubule-based nucleation. by Marco Saltini (22209094)

“…<p>Fraction of microtubule-based nucleation as a function of (A) local and (B) global microtubule density (<i>ρ</i>) during a single simulation run. …”

Mechanomics Code - JVT by Carlo Vittorio Cannistraci (5854046)

“…The functions were tested respectively in: MATLAB 2018a or youger, Python 3.9.4, R 4.0.3.…”

PCNVBrowser by Bioinfo lab. (16615338)

“…</p><p dir="ltr">In total, the resource includes <b>41,964 CNV files</b>, organized at multiple levels of integration:</p><ul><li><b>Individual-level integration</b>: CNV calls from four algorithms combined per individual sample.…”

Code and data for evaluating oil spill amount from text-form incident information by Yiming Liu (18823387)

“…These are separately stored in the folders “description” and “posts”.</p><h2>Algorithms for Evaluating Release Amount (RA)</h2><p dir="ltr">The algorithms are split into the following three notebooks based on their functions:</p><ol><li><b>"1_RA_extraction.ipynb"</b>:</li><li><ul><li>Identifies oil spill-related incidents from raw incident data.…”

Spatiotemporal Soil Erosion Dataset for the Yarlung Tsangpo River Basin (1990–2100) by peng xin (21382394)

“…Bias correction was conducted using a 25-year baseline (1990–2014), with adjustments made monthly to correct for seasonal biases. The corrected bias functions were then applied to adjust the years (2020–2100) of daily rainfall data using the "ibicus" package, an open-source Python tool for bias adjustment and climate model evaluation. …”

NanoDB: Research Activity Data Management System by Lorenci Gjurgjaj (19702207)

“…Cross-Platform Compatibility: Works on Windows, macOS, and Linux. In a Python environment or as an executable. Ease of Implementation: Using the flexibility of the Python framework all the data setup and algorithm can me modified and new functions can be easily added. …”

Code and Data for 'Fabrication and testing of lensed fiber optic probes for distance sensing using common path low coherence interferometry' by Radu Stancu (21165068)

“…Distance Sensing</p><p dir="ltr">Code and data to demonstrate extracting distance sensing data from A-scans and to generate Fig. 8 using the algorithm described in Fig. 7. Functions to generate distance measurements are in 'distance_sensing_utilities.py' and an example of how to use this on data in the 'data' folder is in 'distance_sensing_example.py', which generates Fig 8. …”

Communication-Efficient Distributed Sparse Learning with Oracle Property and Geometric Convergence* by Weidong Liu (444731)

“…In terms of computational efficacy, our algorithm exhibits a geometric convergence rate within each middle loop. …”

Code by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr"><b>RNA functional analysis</b></p><p dir="ltr">Gene Ontology (GO) analysis was performed using the Metascape website, and gene set enrichment analysis (GSEA) was conducted using the GSEABase and enrichplot packages in R. …”

Core data by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr"><b>RNA functional analysis</b></p><p dir="ltr">Gene Ontology (GO) analysis was performed using the Metascape website, and gene set enrichment analysis (GSEA) was conducted using the GSEABase and enrichplot packages in R. …”