Image 9_MS4A7 based metabolic gene signature as a prognostic predictor in lung adenocarcinoma.jpeg by Yan Jiang (12139)

“…</p>Methods<p>A prognostic signature for LUAD was developed using the LASSO-Cox regression algorithm with RNA-seq data from 500 LUAD patients in The Cancer Genome Atlas database. …”

Image 6_MS4A7 based metabolic gene signature as a prognostic predictor in lung adenocarcinoma.jpeg by Yan Jiang (12139)

“…</p>Methods<p>A prognostic signature for LUAD was developed using the LASSO-Cox regression algorithm with RNA-seq data from 500 LUAD patients in The Cancer Genome Atlas database. …”

Image 7_MS4A7 based metabolic gene signature as a prognostic predictor in lung adenocarcinoma.jpeg by Yan Jiang (12139)

“…</p>Methods<p>A prognostic signature for LUAD was developed using the LASSO-Cox regression algorithm with RNA-seq data from 500 LUAD patients in The Cancer Genome Atlas database. …”

Image 5_MS4A7 based metabolic gene signature as a prognostic predictor in lung adenocarcinoma.jpeg by Yan Jiang (12139)

“…</p>Methods<p>A prognostic signature for LUAD was developed using the LASSO-Cox regression algorithm with RNA-seq data from 500 LUAD patients in The Cancer Genome Atlas database. …”

Data_Sheet_3_Potential diagnostic markers and therapeutic targets for non-alcoholic fatty liver disease and ulcerative colitis based on bioinformatics analysis and machine learning... by Zheng Luo (284622)

“…Subsequently, the Cytohubba algorithm within Cytoscape was used to identify central genes. …”

Data_Sheet_4_Potential diagnostic markers and therapeutic targets for non-alcoholic fatty liver disease and ulcerative colitis based on bioinformatics analysis and machine learning... by Zheng Luo (284622)

“…Subsequently, the Cytohubba algorithm within Cytoscape was used to identify central genes. …”

Data_Sheet_2_Potential diagnostic markers and therapeutic targets for non-alcoholic fatty liver disease and ulcerative colitis based on bioinformatics analysis and machine learning... by Zheng Luo (284622)

“…Subsequently, the Cytohubba algorithm within Cytoscape was used to identify central genes. …”

Data_Sheet_1_Potential diagnostic markers and therapeutic targets for non-alcoholic fatty liver disease and ulcerative colitis based on bioinformatics analysis and machine learning... by Zheng Luo (284622)

“…Subsequently, the Cytohubba algorithm within Cytoscape was used to identify central genes. …”

Data Sheet 2_Characterization of the salivary microbiome in healthy individuals under fatigue status.docx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 3_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Data Sheet 1_Characterization of the salivary microbiome in healthy individuals under fatigue status.docx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 5_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 4_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 2_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

Table 1_Characterization of the salivary microbiome in healthy individuals under fatigue status.xlsx by Xianhui Peng (14551488)

“…Bioinformatics analyses encompassed assessment of alpha and beta diversity, identification of differential taxa using Linear discriminant analysis Effect Size (LEfSe) with multi-method cross-validation, construction of microbial co-occurrence networks, and screening of fatigue-associated biomarker genera via the Boruta-SHAP algorithm. Microbial community phenotypes and potential functional pathways were predicted using BugBase and PICRUSt2, respectively.…”

CIAHS-Data.xls by Yingchang Li (22195585)

“…This method identifies inherent natural grouping points within the data through the Jenks optimization algorithm, maximizing between-class differences while minimizing within-class differences37. …”

Table 1_Development of a prognostic prediction model and visualization system for autologous costal cartilage rhinoplasty: an automated machine learning approach.docx by Aihemaitijiang Niyazi (22355542)

“…We proposed an improved metaheuristic algorithm (INPDOA) for AutoML optimization, validated against 12 CEC2022 benchmark functions. …”

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> by Shubham Pawar (22471285)

“…</p><h2>Project Structure</h2><pre><pre>Perception_based_neighbourhoods/<br>├── raw_data/<br>│ ├── ET_cells_glasgow/ # Glasgow grid cells for analysis<br>│ └── glasgow_open_built/ # Built area boundaries<br>├── svi_module/ # Street View Image processing<br>│ ├── svi_data/<br>│ │ ├── svi_info.csv # Image metadata (output)<br>│ │ └── images/ # Downloaded images (output)<br>│ ├── get_svi_data.py # Download street view images<br>│ └── trueskill_score.py # Generate TrueSkill scores<br>├── perception_module/ # Perception prediction<br>│ ├── output_data/<br>│ │ └── glasgow_perception.nc # Perception scores (demo data)<br>│ ├── trained_models/ # Pre-trained models<br>│ ├── pred.py # Predict perceptions from images<br>│ └── readme.md # Training instructions<br>└── cluster_module/ # Neighbourhood clustering<br> ├── output_data/<br> │ └── clusters.shp # Final neighbourhood boundaries<br> └── cluster_perceptions.py # Clustering algorithm<br></pre></pre><h2>Prerequisites</h2><ul><li>Python 3.8 or higher</li><li>GDAL/OGR libraries (for geospatial processing)</li></ul><h2>Installation</h2><ol><li>Clone this repository:</li></ol><p dir="ltr">Download the zip file</p><pre><pre>cd perception_based_neighbourhoods<br></pre></pre><ol><li>Install required dependencies:</li></ol><pre><pre>pip install -r requirements.txt<br></pre></pre><p dir="ltr">Required libraries include:</p><ul><li>geopandas</li><li>pandas</li><li>numpy</li><li>xarray</li><li>scikit-learn</li><li>matplotlib</li><li>torch (PyTorch)</li><li>efficientnet-pytorch</li></ul><h2>Usage Guide</h2><h3>Step 1: Download Street View Images</h3><p dir="ltr">Download street view images based on the Glasgow grid sampling locations.…”

Uncertainty and Novelty in Machine Learning by Derek Scott Prijatelj (20364288)

“…This demonstrates identifying information in finite steps to asymptotic statistics and PAC-learning, where we recover identification within finite observations at the cost of uncertainty and error.…”

MCCN Case Study 2 - Spatial projection via modelled data by Donald Hobern (21435904)

“…This study demonstrates: 1) Description of spatial assets using STAC, 2) Loading heterogeneous data sources into a cube, 3) Spatial projection in xarray using different algorithms offered by the <a href="https://pypi.org/project/PyKrige/" rel="nofollow" target="_blank">pykrige</a> and <a href="https://pypi.org/project/rioxarray/" rel="nofollow" target="_blank">rioxarray</a> packages.…”