NRPStransformer, an Accurate Adenylation Domain Specificity Prediction Algorithm for Genome Mining of Nonribosomal Peptides حسب Zhihan Zhang (1403308)

"…Leveraging the sequences within the flavodoxin-like subdomain, we developed a substrate specificity prediction algorithm using a protein language model, achieving 92% overall prediction accuracy for 43 frequently observed amino acids, significantly improving the prediction reliability. …"

Protein-Protein Interaction (PPI) and ceRNA Regulatory Network Analysis. حسب Jie Chu (293795)

Core genes were selected through PPI analysis based on three algorithms. حسب Dong-Hee Han (140305)

"…<p>Among 46 DEGs whose expression significantly changed in A549 and BEAS-2B cell lines, the core genes were selected using three algorithms: MCC, MNC, and DEGREE. <b>(A)</b> The top 10 genes were prioritized using MCC analysis, which identifies the largest clique within the PPI network and selects the central proteins within the clique. …"

Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes حسب Vijay Subramanian (20718933)

"…<p dir="ltr">Supplementary material for Morpheus: A fragment-based algorithm to predict metamorphic behaviour in proteins across proteomes.…"

Identification and functional analysis of hub genes. حسب Wei Ya Lan (22403712)

"…(C, D) Top 10 hub genes identified using the Maximal Clique Centrality (MCC) algorithm; darker colors indicate higher centrality within the PPI network. …"

Pipeline of the interactor algorithm. حسب Jose Cleydson F. Silva (8685594)

Scatter plots of PATH⁺ and our implementation of TNet-BP’s predictions on a held-out, test subset of PDBBind v2020 refined set for one run (90:10 train:test split ratio,... حسب Yuxi Long (11024307)

الموضوعات:

Alphaviruses nsP4 protein alignment. حسب Marie-France Martin (12118879)

Activation functions: Sigmoid function and ReLU function. حسب Wan-Hua Zhang (21601139)

The algorithm is designed to identify patterns in the treatment dataset. حسب Belén Otero-Carrasco (21262360)

Examples of between- and within-community Beta distributions. حسب Alexandria M. Jensen (6494957)

الموضوعات:

Computational Pipeline for Accelerating the Design of Glycomimetics حسب Yao Xiao (227567)

الموضوعات:

A) Ranking of models trained on different feature sets across all tested algorithms, sorted by their F1-score. حسب Jose Cleydson F. Silva (8685594)

Overview of the wavess algorithm and R package. حسب Narmada Sambaturu (4989539)

Isologs, function and residue information of 12 key proteins in MPV replication. حسب Huaichuan Duan (6458477)

2025-01-14 - PAG Talk - Kmerseek - Olga Botvinnik - Seanome حسب Olga Botvinnik (20571431)

الموضوعات:

Immune infiltration analysis by ssGSEA algorithm. حسب Yubin Xue (1537042)

Analysis of ABIDE dataset: Conventional regression frameworks for optimized algorithmic value. حسب Alexandria M. Jensen (6494957)

الموضوعات:

Two protein-ligand complexes shown with their persistence fingerprint. حسب Yuxi Long (11024307)

الموضوعات:

Comparison of algorithms across metrics in test problems. حسب Jihui Hu (19812736)

الموضوعات: