Table 1_Identification and validation of immune and diagnostic biomarkers for interstitial cystitis/painful bladder syndrome by integrating bioinformatics and machine-learning.docx حسب Tao Zhou (117050)

"…The expression and biological functions of key genes in IC/BPS were further validated through in vitro experiments.…"

Data Sheet 1_In situ, modeled, and earth observation monitoring of surface water availability in West African rangelands.pdf حسب Kimberly Slinski (21611483)

Bar plots showing the proportion of possible edges that were inferred at different inter-node distances. حسب David P. Shorten (10668403)

"…(B) shows the same proportions for the functional networks inferred on the same data in the authors’ recent work [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1013500#pcbi.1013500.ref031" target="_blank">31</a>]. …"

DataSheet_1_A novel model based on necroptosis to assess progression for polycystic ovary syndrome and identification of potential therapeutic drugs.docx حسب Mingming Wang (394106)

"…Immune microenvironment analysis was estimated based on ssGSEA algorithm analysis. The Comparative Toxicogenomics Database (CTD) was used to explore potential therapeutic drugs for NDDGs. …"

DataSheet_2_A novel model based on necroptosis to assess progression for polycystic ovary syndrome and identification of potential therapeutic drugs.docx حسب Mingming Wang (394106)

"…Immune microenvironment analysis was estimated based on ssGSEA algorithm analysis. The Comparative Toxicogenomics Database (CTD) was used to explore potential therapeutic drugs for NDDGs. …"

Discordant Samples in Concordance Study. حسب Wenshu Li (762627)

"…The limit of detection (LoD) was estimated at 23.04% tumor purity, with the limit of blank (LoB) confirmed as zero in 60 normal tissue replicates. …"

One variant per line data for LoD study. حسب Wenshu Li (762627)

"…The limit of detection (LoD) was estimated at 23.04% tumor purity, with the limit of blank (LoB) confirmed as zero in 60 normal tissue replicates. …"

One variant per line data for precision study. حسب Wenshu Li (762627)

"…The limit of detection (LoD) was estimated at 23.04% tumor purity, with the limit of blank (LoB) confirmed as zero in 60 normal tissue replicates. …"

One variant per line data for concordance study. حسب Wenshu Li (762627)

"…The limit of detection (LoD) was estimated at 23.04% tumor purity, with the limit of blank (LoB) confirmed as zero in 60 normal tissue replicates. …"

Table 5_MMPred: a tool to predict peptide mimicry events in MHC class II recognition.xlsx حسب Filippo Guerri (17017524)

"…To evaluate MMPred’s ability to produce biologically meaningful insights, we conducted a comprehensive assessment involving i) predicting associations between known HLA class II human autoepitopes and microbial-peptide mimicry, ii) interpreting these predictions within a systems biology framework to identify potential functional links between the predicted autoantigens and pathophysiological pathways related to autoimmune diseases, and iii) analyzing illustrative cases in the context of SARS-CoV-2 infection and autoimmunity. …"

Table 3_MMPred: a tool to predict peptide mimicry events in MHC class II recognition.xlsx حسب Filippo Guerri (17017524)

"…To evaluate MMPred’s ability to produce biologically meaningful insights, we conducted a comprehensive assessment involving i) predicting associations between known HLA class II human autoepitopes and microbial-peptide mimicry, ii) interpreting these predictions within a systems biology framework to identify potential functional links between the predicted autoantigens and pathophysiological pathways related to autoimmune diseases, and iii) analyzing illustrative cases in the context of SARS-CoV-2 infection and autoimmunity. …"

Table 6_MMPred: a tool to predict peptide mimicry events in MHC class II recognition.xlsx حسب Filippo Guerri (17017524)

"…To evaluate MMPred’s ability to produce biologically meaningful insights, we conducted a comprehensive assessment involving i) predicting associations between known HLA class II human autoepitopes and microbial-peptide mimicry, ii) interpreting these predictions within a systems biology framework to identify potential functional links between the predicted autoantigens and pathophysiological pathways related to autoimmune diseases, and iii) analyzing illustrative cases in the context of SARS-CoV-2 infection and autoimmunity. …"

Table 2_MMPred: a tool to predict peptide mimicry events in MHC class II recognition.xlsx حسب Filippo Guerri (17017524)

"…To evaluate MMPred’s ability to produce biologically meaningful insights, we conducted a comprehensive assessment involving i) predicting associations between known HLA class II human autoepitopes and microbial-peptide mimicry, ii) interpreting these predictions within a systems biology framework to identify potential functional links between the predicted autoantigens and pathophysiological pathways related to autoimmune diseases, and iii) analyzing illustrative cases in the context of SARS-CoV-2 infection and autoimmunity. …"

Table 4_MMPred: a tool to predict peptide mimicry events in MHC class II recognition.xlsx حسب Filippo Guerri (17017524)

"…To evaluate MMPred’s ability to produce biologically meaningful insights, we conducted a comprehensive assessment involving i) predicting associations between known HLA class II human autoepitopes and microbial-peptide mimicry, ii) interpreting these predictions within a systems biology framework to identify potential functional links between the predicted autoantigens and pathophysiological pathways related to autoimmune diseases, and iii) analyzing illustrative cases in the context of SARS-CoV-2 infection and autoimmunity. …"

Table 7_MMPred: a tool to predict peptide mimicry events in MHC class II recognition.xlsx حسب Filippo Guerri (17017524)

"…To evaluate MMPred’s ability to produce biologically meaningful insights, we conducted a comprehensive assessment involving i) predicting associations between known HLA class II human autoepitopes and microbial-peptide mimicry, ii) interpreting these predictions within a systems biology framework to identify potential functional links between the predicted autoantigens and pathophysiological pathways related to autoimmune diseases, and iii) analyzing illustrative cases in the context of SARS-CoV-2 infection and autoimmunity. …"

Table 1_MMPred: a tool to predict peptide mimicry events in MHC class II recognition.xlsx حسب Filippo Guerri (17017524)

"…To evaluate MMPred’s ability to produce biologically meaningful insights, we conducted a comprehensive assessment involving i) predicting associations between known HLA class II human autoepitopes and microbial-peptide mimicry, ii) interpreting these predictions within a systems biology framework to identify potential functional links between the predicted autoantigens and pathophysiological pathways related to autoimmune diseases, and iii) analyzing illustrative cases in the context of SARS-CoV-2 infection and autoimmunity. …"

Table 8_MMPred: a tool to predict peptide mimicry events in MHC class II recognition.xlsx حسب Filippo Guerri (17017524)

"…To evaluate MMPred’s ability to produce biologically meaningful insights, we conducted a comprehensive assessment involving i) predicting associations between known HLA class II human autoepitopes and microbial-peptide mimicry, ii) interpreting these predictions within a systems biology framework to identify potential functional links between the predicted autoantigens and pathophysiological pathways related to autoimmune diseases, and iii) analyzing illustrative cases in the context of SARS-CoV-2 infection and autoimmunity. …"

Assessing the risk of acute kidney injury associated with a four-drug regimen for heart failure: a ten-year real-world pharmacovigilance analysis based on FAERS events حسب Sen Lin (182597)

"…On average, serious side effects occurred within 39 days of starting treatment, with kidney problems appearing even sooner (around 28 days). …"

Forearm motor unit control project حسب INcEPTION (16610781)

"…<p dir="ltr">The aim of this project was to investigate how the nervous system modulates the common synaptic inputs to spinal motor neurons during a functionally relevant grip (grasping) compared to less functionally relevant hand tasks. …"

Data Sheet 1_Deep learning in microbiome analysis: a comprehensive review of neural network models.pdf حسب Piotr Przymus (10165658)

"…These computational techniques have become essential for addressing the inherent complexity and high-dimensionality of microbiome data, which consist of different types of omics datasets. Deep learning algorithms have shown remarkable capabilities in pattern recognition, feature extraction, and predictive modeling, enabling researchers to uncover hidden relationships within microbial ecosystems. …"