Hierarchical clustering to infer a binary tree with <i>K</i> = 4 sampled populations. by Tristan Mary-Huard (3864)

Homomorphic binary tree. by Jianhua He (341366)

Visualization 1 (without simplex encoding) by Krzysztof Czajkowski (5141315)

Fig 12 - by Nisha Yadav (366131)

Supplementary Material for: Penalized Logistic Regression Analysis for Genetic Association Studies of Binary Phenotypes by Yu Y. (3096192)

“…We consider two approximate approaches to maximizing the marginal likelihood: (i) a Monte Carlo EM algorithm (MCEM) and (ii) a Laplace approximation (LA) to each integral, followed by derivative-free optimization of the approximation. …”

Variable Selection with Multiply-Imputed Datasets: Choosing Between Stacked and Grouped Methods by Jiacong Du (12035845)

“…Building on existing work, we (i) derive and implement efficient cyclic coordinate descent and majorization-minimization optimization algorithms for continuous and binary outcome data, (ii) incorporate adaptive shrinkage penalties, (iii) compare these methods through simulation, and (iv) develop an R package <i>miselect</i>. …”

Raw LC-MS/MS and RNA-Seq Mitochondria data by Stefano Martellucci (16284377)

“…The data were filtered as follows: (a) binary expression of a protein (i.e., protein exclusively identified in either scLRP1+/+ or scLRP1-/-) was only considered relevant if all scLRP1+/+ samples or all scLRP1-/- samples expressed the protein. …”

Images of mouse popliteal lymph node vascular structure derived using phase-contrast synchrotron micro-computed tomography (µCT) by Mohammad Jafarnejad (6852338)

“…The LN was then surgically excised and placed in a pipette tip before dissolving the tissue with potassium hydroxide. The freeze-dried samples were scanned with high-resolution synchrotron tomography and the radiographs were reconstructed into stack images using a phase-retrieval algorithm. …”