Flowchart of the general algorithm for one trial. by Junying Wang (509009)

Hierarchical clustering to infer a binary tree with <i>K</i> = 4 sampled populations. by Tristan Mary-Huard (3864)

Validation of image processing steps and metric results using images of a microfluidic device. by Gavrielle R. Untracht (11820311)

S1 Data - by Lijie Feng (3412118)

“…The TF-IDF (Term Frequency-Inverse Document Frequency) algorithm processes the data to obtain critical technical words. …”

Visualization of the image segmentation and labeling pipeline for the first frame of an example movie. by Miriam Schnitzerlein (21446136)

PathOlOgics_RBCs Python Scripts.zip by Ahmed Elsafty (16943883)

“…</p><p dir="ltr">To assess the consistency, diversity, and complexity of the processed data, the Uniform Manifold Approximation and Projection (UMAP) technique was employed to investigate the structural relationships among the various classes (see PathOlOgics_script_3; UMAP visualizations). …”

Flowchart of software workflow. by Gavrielle R. Untracht (11820311)

Raw LC-MS/MS and RNA-Seq Mitochondria data by Stefano Martellucci (16284377)

“…The data were filtered as follows: (a) binary expression of a protein (i.e., protein exclusively identified in either scLRP1+/+ or scLRP1-/-) was only considered relevant if all scLRP1+/+ samples or all scLRP1-/- samples expressed the protein. …”

Schematic overview of SINATRA Pro: A novel framework for discovering biophysical signatures that differentiate classes of proteins. by Wai Shing Tang (9541179)

“…<p><b>(A)</b> The SINATRA Pro algorithm requires the following inputs: <i>(i)</i> (<i>x</i>, <i>y</i>, <i>z</i>)-coordinates corresponding to the structural position of each atom in every protein; <i>(ii)</i> <b>y</b>, a binary vector denoting protein class or phenotype (e.g., mutant versus wild-type); <i>(iii)</i> <i>r</i>, the cutoff distance for simplicial construction (i.e., constructing the mesh representation for every protein); <i>(iv)</i> <i>c</i>, the number of cones of directions; <i>(v)</i> <i>d</i>, the number of directions within each cone; <i>(vi)</i> <i>θ</i>, the cap radius used to generate directions in a cone; and <i>(vii)</i> <i>l</i>, the number of sublevel sets (i.e., filtration steps) used to compute the differential Euler characteristic (DEC) curve along a given direction. …”

Data_Sheet_1_Deep Learning-Based Classification of GAD67-Positive Neurons Without the Immunosignal.pdf by Kotaro Yamashiro (10502753)

Images of mouse popliteal lymph node vascular structure derived using phase-contrast synchrotron micro-computed tomography (µCT) by Mohammad Jafarnejad (6852338)

“…The binary data were then skeletonized and diameters and length of the vessels as well as the surface area density were calculated. …”

Machine Learning-Ready Dataset for Cytotoxicity Prediction of Metal Oxide Nanoparticles by Soham Savarkar (21811825)

“…</p><p dir="ltr">IC50 (µg/mL): The concentration at which 50% of cells are inhibited, used as a toxicity threshold.</p><p dir="ltr">These biological metrics were used to define a binary toxicity label: entries were classified as toxic (1) or non-toxic (0) based on thresholds from standardized guidelines (e.g., ISO 10993-5:2009) and literature consensus. …”