Effects of Class Imbalance and Data Scarcity on the Performance of Binary Classification Machine Learning Models Developed Based on ToxCast/Tox21 Assay Data by Changhun Kim (682542)

“…An assay matrix based on CI and DS was prepared for 335 assays with biologically intended target information, and 28 CI assays and 3 DS assays were selected. …”

Testing algorithm for modified 2-tiered approaches to Lyme disease diagnosis. by Richard Porwancher (11413931)

Random forest model performs better than support vector machine algorithms and when it primarily uses spontaneous photopic ERG of 60-s duration in humans. by Ramsés Noguez Imm (6658637)

Schematic representation of semi-automated algorithm for organoids analyzing. by Anna Demchenko (18449439)

<i>hi</i>PRS algorithm process flow. by Michela C. Massi (14599915)

“…From this dataset we can compute the MI between each interaction and the outcome and <b>(D)</b> obtain a ranked list (<i>I</i>_<i>δ</i>) based on this metric. <b>(E)</b> Starting from the interaction at the top of <i>I</i>_<i>δ</i>, <i>hi</i>PRS constructs <i>I</i>_<i>K</i>, selecting <i>K</i> (where <i>K</i> is user-specified) terms through the greedy optimization of the ratio between MI (<i>relevance</i>) and a suitable measure of similarity for interactions (<i>redundancy)</i> (cf. …”

Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity by George S. Watts (7962206)

“…We tested the accuracy, sensitivity, and resource requirements of three top metagenomic taxonomic classifiers that use fast k-mer based algorithms: Centrifuge, CLARK, and KrakenUniq. …”

SHAP bar plot. by Meng Cao (105914)

“…</p><p>Results</p><p>Logistic regression analysis identified age, hemoglobin concentration, education level, and social participation as significant factors influencing CI. Models based on NNET, RF, LR, and SVM algorithms were developed, achieving AUC of 0.918, 0.889, 0.872, and 0.760, respectively, on the test set. …”

Sample screening flowchart. by Meng Cao (105914)

“…</p><p>Results</p><p>Logistic regression analysis identified age, hemoglobin concentration, education level, and social participation as significant factors influencing CI. Models based on NNET, RF, LR, and SVM algorithms were developed, achieving AUC of 0.918, 0.889, 0.872, and 0.760, respectively, on the test set. …”

Descriptive statistics for variables. by Meng Cao (105914)

“…</p><p>Results</p><p>Logistic regression analysis identified age, hemoglobin concentration, education level, and social participation as significant factors influencing CI. Models based on NNET, RF, LR, and SVM algorithms were developed, achieving AUC of 0.918, 0.889, 0.872, and 0.760, respectively, on the test set. …”

SHAP summary plot. by Meng Cao (105914)

“…</p><p>Results</p><p>Logistic regression analysis identified age, hemoglobin concentration, education level, and social participation as significant factors influencing CI. Models based on NNET, RF, LR, and SVM algorithms were developed, achieving AUC of 0.918, 0.889, 0.872, and 0.760, respectively, on the test set. …”

ROC curves for the test set of four models. by Meng Cao (105914)

“…</p><p>Results</p><p>Logistic regression analysis identified age, hemoglobin concentration, education level, and social participation as significant factors influencing CI. Models based on NNET, RF, LR, and SVM algorithms were developed, achieving AUC of 0.918, 0.889, 0.872, and 0.760, respectively, on the test set. …”

Display of the web prediction interface. by Meng Cao (105914)

“…</p><p>Results</p><p>Logistic regression analysis identified age, hemoglobin concentration, education level, and social participation as significant factors influencing CI. Models based on NNET, RF, LR, and SVM algorithms were developed, achieving AUC of 0.918, 0.889, 0.872, and 0.760, respectively, on the test set. …”

Spontaneous ERG-based random forest model discriminates control and disease cases in rodent models of obesity and type 1 diabetes and predicts disease evolution in the type 1 diabe... by Ramsés Noguez Imm (6658637)

Supplementary Material 8 by Nishitha R Kumar (19750617)

“…</li><li><b>XGboost: </b>An optimized gradient boosting algorithm that efficiently handles large genomic datasets, commonly used for high-accuracy predictions in <i>E. coli</i> classification.…”

Machine Learning-Ready Dataset for Cytotoxicity Prediction of Metal Oxide Nanoparticles by Soham Savarkar (21811825)

“…</p><p dir="ltr">These biological metrics were used to define a binary toxicity label: entries were classified as toxic (1) or non-toxic (0) based on thresholds from standardized guidelines (e.g., ISO 10993-5:2009) and literature consensus. …”