Table_1_Overlapping Structures Detection in Protein-Protein Interaction Networks Using Community Detection Algorithm Based on Neighbor Clustering Coefficient.docx حسب Yan Wang (15435)

Table_1_Overlapping Structures Detection in Protein-Protein Interaction Networks Using Community Detection Algorithm Based on Neighbor Clustering Coefficient.docx حسب Yan Wang (15435)

Graphical overview of the proposed single-cell clustering algorithm. حسب Jun Seo Ha (15295310)

WGCNA analysis and construction of a prognostic risk score based on CXCL9 + macrophage-related genes. حسب Bin Liang (228729)

Stochastic simulation and statistical inference platform for visualization and estimation of transcriptional kinetics حسب Gennady Gorin (8466255)

"…As a demonstration, we show that the optimization algorithm can successfully recover the transcriptional kinetics of simulated and experimental gene expression data. …"

<i>OptRAM</i>: <i>In-silico</i> strain design via integrative regulatory-metabolic network modeling حسب Fangzhou Shen (5140994)

"…To address challenges in metabolic engineering, computational strain optimization algorithms based on genome-scale metabolic models have increasingly been used to aid in overproducing products of interest. …"

Optimal stability ranking of candidate reference genes using geNorm, NormFinder, BestKeeper, and rank aggregation method. حسب Marina Linardić (10720448)

Raw Data for the Thesis: "<i>Enhancing RNAi-Based Pest Control through Effective Target Gene Selection and Optimal dsRNA Design</i>" حسب Doga CEDDEN (12675286)

"…</p><p><br></p><p dir="ltr">Chapter 4 introduces the dsRIP web platform (<a href="https://dsrip.uni-goettingen.de/" target="_blank">https://dsrip.uni-goettingen.de/</a>) for designing sequence-optimized dsRNA for RNAi-based pest control. In the experimental part, small interfering RNA (siRNA) features that were associated with RNAi efficacy in human cells were tested in <i>T. castaneum </i>by targeting an essential gene and measuring insecticidal efficacy. …"

DataSheet_1_Trans-population graph-based coverage optimization of allogeneic cellular therapy.xlsx حسب Sapir Israeli (15415241)

"…We propose here a solution to this problem, and test whether it would be more expensive to recruit additional donors or to prevent class I or class II HLA expression through gene editing.</p>Study design<p>We developed an optimal coverage problem, combined with a graph-based algorithm to solve the donor selection problem under different, clinically plausible scenarios (having different HLA matching priorities). …"

DataSheet_1_Trans-population graph-based coverage optimization of allogeneic cellular therapy.xlsx حسب Sapir Israeli (15415241)

"…We propose here a solution to this problem, and test whether it would be more expensive to recruit additional donors or to prevent class I or class II HLA expression through gene editing.</p>Study design<p>We developed an optimal coverage problem, combined with a graph-based algorithm to solve the donor selection problem under different, clinically plausible scenarios (having different HLA matching priorities). …"

DataSheet_1_Trans-population graph-based coverage optimization of allogeneic cellular therapy.xlsx حسب Sapir Israeli (15415241)

"…We propose here a solution to this problem, and test whether it would be more expensive to recruit additional donors or to prevent class I or class II HLA expression through gene editing.</p>Study design<p>We developed an optimal coverage problem, combined with a graph-based algorithm to solve the donor selection problem under different, clinically plausible scenarios (having different HLA matching priorities). …"

Three machine learning algorithms were further employed to select candidate key hub genes. حسب Zhifeng Wu (303016)

Gex2SGen: Designing Drug-like Molecules from Desired Gene Expression Signatures حسب Dibyajyoti Das (14845321)

الموضوعات:

Gex2SGen: Designing Drug-like Molecules from Desired Gene Expression Signatures حسب Dibyajyoti Das (14845321)

الموضوعات:

Gex2SGen: Designing Drug-like Molecules from Desired Gene Expression Signatures حسب Dibyajyoti Das (14845321)

الموضوعات:

Table 1_Identification of immunogenic cell death signature genes in hepatocellular carcinoma: from single-cell transcriptomics to in vitro mechanistic validation and comprehensive... حسب Hongliang Liu (188124)

"…We identified HCC-specific ICD-related (HCC-ICDR) genes via WGCNA and optimized a prognostic model by benchmarking machine learning algorithms. …"

Table_1_One-Time Optimization of Advanced T Cell Culture Media Using a Machine Learning Pipeline.DOCX حسب Paul Grzesik (11136582)

"…<p>The growing application of cell and gene therapies in humans leads to a need for cell type-optimized culture media. …"

Table1_Prognostic prediction of clear cell renal cell carcinoma based on lipid metabolism-related lncRNA risk coefficient model.xlsx حسب GenYi Qu (14323851)

Table2_Prognostic prediction of clear cell renal cell carcinoma based on lipid metabolism-related lncRNA risk coefficient model.xlsx حسب GenYi Qu (14323851)

Data Sheet 1_Identification of immunogenic cell death signature genes in hepatocellular carcinoma: from single-cell transcriptomics to in vitro mechanistic validation and comprehen... حسب Hongliang Liu (188124)

"…We identified HCC-specific ICD-related (HCC-ICDR) genes via WGCNA and optimized a prognostic model by benchmarking machine learning algorithms. …"