Graphical overview of the proposed single-cell clustering algorithm. by Jun Seo Ha (15295310)

WGCNA analysis and construction of a prognostic risk score based on CXCL9 + macrophage-related genes. by Bin Liang (228729)

Stochastic simulation and statistical inference platform for visualization and estimation of transcriptional kinetics by Gennady Gorin (8466255)

“…As a demonstration, we show that the optimization algorithm can successfully recover the transcriptional kinetics of simulated and experimental gene expression data. …”

<i>OptRAM</i>: <i>In-silico</i> strain design via integrative regulatory-metabolic network modeling by Fangzhou Shen (5140994)

“…To address challenges in metabolic engineering, computational strain optimization algorithms based on genome-scale metabolic models have increasingly been used to aid in overproducing products of interest. …”

An Example of a WPT-MEC Network. by Hend Bayoumi (22693738)

“…To enhance the offloading decision-making process, the algorithm incorporates the Newton-Raphson method for fast and efficient optimization of the computation rate under energy constraints. …”

Related Work Summary. by Hend Bayoumi (22693738)

“…To enhance the offloading decision-making process, the algorithm incorporates the Newton-Raphson method for fast and efficient optimization of the computation rate under energy constraints. …”

Simulation parameters. by Hend Bayoumi (22693738)

“…To enhance the offloading decision-making process, the algorithm incorporates the Newton-Raphson method for fast and efficient optimization of the computation rate under energy constraints. …”

Training losses for N = 10. by Hend Bayoumi (22693738)

“…To enhance the offloading decision-making process, the algorithm incorporates the Newton-Raphson method for fast and efficient optimization of the computation rate under energy constraints. …”

Normalized computation rate for N = 10. by Hend Bayoumi (22693738)

“…To enhance the offloading decision-making process, the algorithm incorporates the Newton-Raphson method for fast and efficient optimization of the computation rate under energy constraints. …”

Summary of Notations Used in this paper. by Hend Bayoumi (22693738)

“…To enhance the offloading decision-making process, the algorithm incorporates the Newton-Raphson method for fast and efficient optimization of the computation rate under energy constraints. …”

Optimal stability ranking of candidate reference genes using geNorm, NormFinder, BestKeeper, and rank aggregation method. by Marina Linardić (10720448)

Raw Data for the Thesis: "<i>Enhancing RNAi-Based Pest Control through Effective Target Gene Selection and Optimal dsRNA Design</i>" by Doga CEDDEN (12675286)

“…</p><p><br></p><p dir="ltr">Chapter 4 introduces the dsRIP web platform (<a href="https://dsrip.uni-goettingen.de/" target="_blank">https://dsrip.uni-goettingen.de/</a>) for designing sequence-optimized dsRNA for RNAi-based pest control. In the experimental part, small interfering RNA (siRNA) features that were associated with RNAi efficacy in human cells were tested in <i>T. castaneum </i>by targeting an essential gene and measuring insecticidal efficacy. …”

GSE96058 information. by Sepideh Zununi Vahed (9861298)

“…Subsequently, feature selection was conducted using ANOVA and binary Particle Swarm Optimization (PSO). During the analysis phase, the discriminative power of the selected features was evaluated using machine learning classification algorithms. …”

The performance of classifiers. by Sepideh Zununi Vahed (9861298)

“…Subsequently, feature selection was conducted using ANOVA and binary Particle Swarm Optimization (PSO). During the analysis phase, the discriminative power of the selected features was evaluated using machine learning classification algorithms. …”

DataSheet_1_Trans-population graph-based coverage optimization of allogeneic cellular therapy.xlsx by Sapir Israeli (15415241)

“…We propose here a solution to this problem, and test whether it would be more expensive to recruit additional donors or to prevent class I or class II HLA expression through gene editing.</p>Study design<p>We developed an optimal coverage problem, combined with a graph-based algorithm to solve the donor selection problem under different, clinically plausible scenarios (having different HLA matching priorities). …”

DataSheet_1_Trans-population graph-based coverage optimization of allogeneic cellular therapy.xlsx by Sapir Israeli (15415241)

“…We propose here a solution to this problem, and test whether it would be more expensive to recruit additional donors or to prevent class I or class II HLA expression through gene editing.</p>Study design<p>We developed an optimal coverage problem, combined with a graph-based algorithm to solve the donor selection problem under different, clinically plausible scenarios (having different HLA matching priorities). …”

DataSheet_1_Trans-population graph-based coverage optimization of allogeneic cellular therapy.xlsx by Sapir Israeli (15415241)

“…We propose here a solution to this problem, and test whether it would be more expensive to recruit additional donors or to prevent class I or class II HLA expression through gene editing.</p>Study design<p>We developed an optimal coverage problem, combined with a graph-based algorithm to solve the donor selection problem under different, clinically plausible scenarios (having different HLA matching priorities). …”

Three machine learning algorithms were further employed to select candidate key hub genes. by Zhifeng Wu (303016)

Gex2SGen: Designing Drug-like Molecules from Desired Gene Expression Signatures by Dibyajyoti Das (14845321)

Subjects:

Gex2SGen: Designing Drug-like Molecules from Desired Gene Expression Signatures by Dibyajyoti Das (14845321)

Subjects: