Flowchart of the general algorithm for one trial. حسب Junying Wang (509009)

Hierarchical clustering to infer a binary tree with <i>K</i> = 4 sampled populations. حسب Tristan Mary-Huard (3864)

Validation of image processing steps and metric results using images of a microfluidic device. حسب Gavrielle R. Untracht (11820311)

S1 Data - حسب Lijie Feng (3412118)

"…The TF-IDF (Term Frequency-Inverse Document Frequency) algorithm processes the data to obtain critical technical words. …"

Visualization of the image segmentation and labeling pipeline for the first frame of an example movie. حسب Miriam Schnitzerlein (21446136)

PathOlOgics_RBCs Python Scripts.zip حسب Ahmed Elsafty (16943883)

"…</p><p dir="ltr">To assess the consistency, diversity, and complexity of the processed data, the Uniform Manifold Approximation and Projection (UMAP) technique was employed to investigate the structural relationships among the various classes (see PathOlOgics_script_3; UMAP visualizations). …"

Flowchart of software workflow. حسب Gavrielle R. Untracht (11820311)

Raw LC-MS/MS and RNA-Seq Mitochondria data حسب Stefano Martellucci (16284377)

"…The data were filtered as follows: (a) binary expression of a protein (i.e., protein exclusively identified in either scLRP1+/+ or scLRP1-/-) was only considered relevant if all scLRP1+/+ samples or all scLRP1-/- samples expressed the protein. …"

Schematic overview of SINATRA Pro: A novel framework for discovering biophysical signatures that differentiate classes of proteins. حسب Wai Shing Tang (9541179)

"…<p><b>(A)</b> The SINATRA Pro algorithm requires the following inputs: <i>(i)</i> (<i>x</i>, <i>y</i>, <i>z</i>)-coordinates corresponding to the structural position of each atom in every protein; <i>(ii)</i> <b>y</b>, a binary vector denoting protein class or phenotype (e.g., mutant versus wild-type); <i>(iii)</i> <i>r</i>, the cutoff distance for simplicial construction (i.e., constructing the mesh representation for every protein); <i>(iv)</i> <i>c</i>, the number of cones of directions; <i>(v)</i> <i>d</i>, the number of directions within each cone; <i>(vi)</i> <i>θ</i>, the cap radius used to generate directions in a cone; and <i>(vii)</i> <i>l</i>, the number of sublevel sets (i.e., filtration steps) used to compute the differential Euler characteristic (DEC) curve along a given direction. …"

Data_Sheet_1_Deep Learning-Based Classification of GAD67-Positive Neurons Without the Immunosignal.pdf حسب Kotaro Yamashiro (10502753)

Images of mouse popliteal lymph node vascular structure derived using phase-contrast synchrotron micro-computed tomography (µCT) حسب Mohammad Jafarnejad (6852338)

"…The binary data were then skeletonized and diameters and length of the vessels as well as the surface area density were calculated. …"