Supplementary Material for: Penalized Logistic Regression Analysis for Genetic Association Studies of Binary Phenotypes by Yu Y. (3096192)

“…Our estimate of m is the maximizer of a marginal likelihood obtained by integrating the latent log-ORs out of the joint distribution of the parameters and observed data. We consider two approximate approaches to maximizing the marginal likelihood: (i) a Monte Carlo EM algorithm (MCEM) and (ii) a Laplace approximation (LA) to each integral, followed by derivative-free optimization of the approximation. …”

Parameter settings. by Yang Cao (53545)

“…<div><p>Differential Evolution (DE) is widely recognized as a highly effective evolutionary algorithm for global optimization. It has proven its efficacy in tackling diverse problems across various fields and real-world applications. …”

An exemplar procedure for activity flow modeling based on the direct and shortest paths at a network density of 15%. by Zhengdong Wang (35299)

datasheet1_Graph Neural Networks for Maximum Constraint Satisfaction.pdf by Jan Tönshoff (10192709)

Data_Sheet_1_Multiclass Classification Based on Combined Motor Imageries.pdf by Cecilia Lindig-León (7889777)

Surround Suppression mechanism. by Elnaz Nemati (21402730)

Solubility Prediction of Different Forms of Pharmaceuticals in Single and Mixed Solvents Using Symmetric Electrolyte Nonrandom Two-Liquid Segment Activity Coefficient Model by Getachew S. Molla (6416744)

“…Because of the semipredictive nature of the symmetric eNRTL-SAC model, the segment parameter regression is a critical step for solubility prediction accuracy. A particle swarm optimization algorithm is incorporated to preregress conceptual segment parameters of solutes. …”

Processed dataset to train and test the WGAN-GP_IMOA_DA_Ensemble model by Ramya Chinnasamy (21633527)

DataSheet1_Applying the Hubbard-Stratonovich Transformation to Solve Scheduling Problems Under Inequality Constraints With Quantum Annealing.pdf by Sizhuo Yu (11429743)

Contextual Dynamic Pricing with Strategic Buyers by Pangpang Liu (18886419)

“…This underscores the rate optimality of our policy. Importantly, our policy is not a mere amalgamation of existing dynamic pricing policies and strategic behavior handling algorithms. …”

Fig 12 - by Nisha Yadav (366131)

Flowchart scheme of the ML-based model. by Noshaba Qasmi (20405009)

“…<b>J)</b> Optimization of hyperparameter tuning. <b>K)</b> Algorithm selection from all models. …”

Table_1_iRNA5hmC: The First Predictor to Identify RNA 5-Hydroxymethylcytosine Modifications Using Machine Learning.docx by Yuan Liu (88411)

“…In this predictor, we introduced a sequence-based feature algorithm consisting of two feature representations, (1) k-mer spectrum and (2) positional nucleotide binary vector, to capture the sequential characteristics of 5hmC sites. …”

Flow diagram of the automatic animal detection and background reconstruction. by David Tadres (9120564)

“…If the identical blob that was detected in panel J (bottom) is found in any of the new subtracted binary images (cyan arrow), the animal is considered as having left its original position, and the algorithm continues. …”

DataSheet_1_Near infrared spectroscopy for cooking time classification of cassava genotypes.docx by Massaine Bandeira e Sousa (7866242)

“…Classification of genotypes was carried out using the K-nearest neighbor algorithm (KNN) and partial least squares (PLS) models. …”

Table_1_Near infrared spectroscopy for cooking time classification of cassava genotypes.docx by Massaine Bandeira e Sousa (7866242)

“…Classification of genotypes was carried out using the K-nearest neighbor algorithm (KNN) and partial least squares (PLS) models. …”

Active Learning Accelerated Discovery of Stable Iridium Oxide Polymorphs for the Oxygen Evolution Reaction by Raul A. Flores (2910539)

“…We emphasize that the proposed AL algorithm can be easily generalized to search for any binary metal oxide structure with a defined stoichiometry.…”

Seed mix selection model by Bethanne Bruninga-Socolar (10923639)

“…Classic genetic algorithms consider a population of chromosomes and apply principles of natural selection (selection, mutation, and crossover processes) to generate optimal solutions. …”

Machine Learning-Ready Dataset for Cytotoxicity Prediction of Metal Oxide Nanoparticles by Soham Savarkar (21811825)

“…Details on the data sourcing process, prompt engineering strategies for large language model (LLM)-based extraction, and validation protocols are provided in the Supplementary Information section.…”