Search alternatives:
table classification » enables classification (Expand Search), sample classification (Expand Search), label classification (Expand Search)
whole optimization » whale optimization (Expand Search), wolf optimization (Expand Search), dose optimization (Expand Search)
binary based » library based (Expand Search), linac based (Expand Search), binary mask (Expand Search)
binary data » primary data (Expand Search), dietary data (Expand Search)
based whole » used whole (Expand Search)
table classification » enables classification (Expand Search), sample classification (Expand Search), label classification (Expand Search)
whole optimization » whale optimization (Expand Search), wolf optimization (Expand Search), dose optimization (Expand Search)
binary based » library based (Expand Search), linac based (Expand Search), binary mask (Expand Search)
binary data » primary data (Expand Search), dietary data (Expand Search)
based whole » used whole (Expand Search)
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<i>hi</i>PRS algorithm process flow.
Published 2023“…The sequences can include from a single SNP-allele pair up to a maximum number of pairs defined by the user (<i>l</i><sub>max</sub>). <b>(C)</b> The whole training data is then scanned, searching for these sequences and deriving a re-encoded dataset where interaction terms are binary features (i.e., 1 if sequence <i>i</i> is observed in <i>j</i>-th patient genotype, 0 otherwise). …”
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Schematic overview of SINATRA Pro: A novel framework for discovering biophysical signatures that differentiate classes of proteins.
Published 2022“…<p><b>(A)</b> The SINATRA Pro algorithm requires the following inputs: <i>(i)</i> (<i>x</i>, <i>y</i>, <i>z</i>)-coordinates corresponding to the structural position of each atom in every protein; <i>(ii)</i> <b>y</b>, a binary vector denoting protein class or phenotype (e.g., mutant versus wild-type); <i>(iii)</i> <i>r</i>, the cutoff distance for simplicial construction (i.e., constructing the mesh representation for every protein); <i>(iv)</i> <i>c</i>, the number of cones of directions; <i>(v)</i> <i>d</i>, the number of directions within each cone; <i>(vi)</i> <i>θ</i>, the cap radius used to generate directions in a cone; and <i>(vii)</i> <i>l</i>, the number of sublevel sets (i.e., filtration steps) used to compute the differential Euler characteristic (DEC) curve along a given direction. …”