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design optimization » bayesian optimization (Expand Search)
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design optimization » bayesian optimization (Expand Search)
after optimization » based optimization (Expand Search), model optimization (Expand Search), path optimization (Expand Search)
edna sampling » each sampling (Expand Search), data sampling (Expand Search)
image after » images after (Expand Search)
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Code and data for Lambert and Ellner, "SDM meets eDNA: optimal sampling of environmental DNA to estimate species-environment relationships in stream networks", Ecography (2025)
Published 2025“…The code includes: (1) an iterative generalized least squares solution method for estimating model parameters, (2) a genetic algorithm for finding D-optimal sampling designs (i.e., the positioning of samples on a stream network that most accurately estimates species-environment relationships), and (3) generalized additive models for estimating the dependence of estimation accuracy on a stream network's topological and hydrologic properties.…”
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PathOlOgics_RBCs Python Scripts.zip
Published 2023“…</p><p dir="ltr">In terms of classification, a second algorithm was developed and employed to preliminary sort or group the individual cells (after excluding the overlapping cells manually) into different categories using five geometric measurements applied to the extracted contour from each binary image mask (see PathOlOgics_script_2; preliminary shape measurements). …”
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Flow diagram of the automatic animal detection and background reconstruction.
Published 2020“…If the identical blob that was detected in panel J (bottom) is found in any of the new subtracted binary images (cyan arrow), the animal is considered as having left its original position, and the algorithm continues. …”
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Fortran & C++: design fractal-type optical diffractive element
Published 2022“…</p> <p>(2) calculate diffraction fields for fractal and/or grid-matrix (binary) phase-holograms.</p> <p>(3) optimize the fractal and/or grid-matrix holograms for given target diffraction images, using annealing algorithms. …”