A* Path-Finding Algorithm to Determine Cell Connections حسب Max Weng (22327159)

"…</p><p dir="ltr">Astrocytes were dissociated from E18 mouse cortical tissue, and image data were processed using a Cellpose 2.0 model to mask nuclei. Pixel paths were classified using a z-score brightness threshold of 1.21, optimized for noise reduction and accuracy. …"

Schematic representation of semi-automated algorithm for organoids analyzing. حسب Anna Demchenko (18449439)

Experimental observation of gastruloids and shape quantification using LOCO-EFA. حسب Martijn A. de Jong (17896732)

Algoritmo de clasificación de expresiones de odio por tipos en español (Algorithm for classifying hate expressions by type in Spanish) حسب Daniel Pérez Palau (11097348)

"…</p><h2>Model Architecture</h2><p dir="ltr">The model is based on <code>pysentimiento/robertuito-base-uncased</code> with the following modifications:</p><ul><li>A dense classification layer was added over the base model</li><li>Uses input IDs and attention masks as inputs</li><li>Generates a multi-class classification with 5 hate categories</li></ul><h2>Dataset</h2><p dir="ltr"><b>HATEMEDIA Dataset</b>: Custom hate speech dataset with categorization by type:</p><ul><li><b>Labels</b>: 5 hate type categories (0-4)</li><li><b>Preprocessing</b>:</li><li>Null values ​​removed from text and labels</li><li>Reindexing and relabeling (original labels are adjusted by subtracting 1)</li><li>Exclusion of category 2 during training</li><li>Conversion of category 5 to category 2</li></ul><h2>Training Process</h2><h3>Configuration</h3><ul><li><b>Batch size</b>: 128</li><li><b>Epoches</b>: 5</li><li><b>Learning rate</b>: 2e-5 with 10% warmup steps</li><li><b>Early stopping</b> with patience=2</li><li><b>Class weights</b>: Balanced to handle class imbalance</li></ul><h3>Custom Metrics</h3><ul><li>Recall for specific classes (focus on class 2)</li><li>Precision for specific classes (focus on class 3)</li><li>F1-score (weighted)</li><li>AUC-PR</li><li>Recall at precision=0.6 (class 3)</li><li>Precision at recall=0.6 (class 2)</li></ul><h2>Evaluation Metrics</h2><p dir="ltr">The model is evaluated using:</p><ul><li>Macro recall, precision, and F1-score</li><li>One-vs-Rest AUC</li><li>Accuracy</li><li>Per-class metrics</li><li>Confusion matrix</li><li>Full classification report</li></ul><h2>Technical Features</h2><h3>Data Preprocessing</h3><ul><li><b>Tokenization</b>: Maximum length of 128 tokens (truncation and padding)</li><li><b>Encoding of labels</b>: One-hot encoding for multi-class classification</li><li><b>Data split</b>: 80% training, 10% validation, 10% testing</li></ul><h3>Optimization</h3><ul><li><b>Optimizer</b>: Adam with linear warmup scheduling</li><li><b>Loss function</b>: Categorical Crossentropy (from_logits=True)</li><li><b>Imbalance handling</b>: Class weights computed automatically</li></ul><h2>Requirements</h2><p dir="ltr">The following Python packages are required:</p><ul><li>TensorFlow</li><li>Transformers</li><li>scikit-learn</li><li>pandas</li><li>datasets</li><li>matplotlib</li><li>seaborn</li><li>numpy</li></ul><h2>Usage</h2><ol><li><b>Data format</b>:</li></ol><ul><li>CSV file or Pandas DataFrame</li><li>Required column name: <code>text</code> (string type)</li><li>Required column name: Data type label (integer type, 0-4) - optional for evaluation</li></ul><ol><li><b>Text preprocessing</b>:</li></ol><ul><li>Automatic tokenization with a maximum length of 128 tokens</li><li>Long texts will be automatically truncated</li><li>Handling of special characters, URLs, and emojis included</li></ul><ol><li><b>Label encoding</b>:</li></ol><ul><li>The model classifies hate speech into 5 categories (0-4)</li><li><code>0</code>: Political hatred: Expressions directed against individuals or groups based on political orientation.…"

Image processing workflow. حسب Denis Tamiev (7404980)

"…<p>Raw fluorescent microscope images (a) were processed with a binary segmentation algorithm, and clusters of bacterial cells were manually annotated. …"

Steps in the extraction of 14 coordinates from the CT slices for the curved MPR. حسب Linus Woitke (22783534)

"…<p>It shows the step-by-step transformation for two examples on the left and right sides: a) a binary mask of the lower dental arch is shown, which is compared with the binarized CT images to obtain the best slice containing the lower jaw, as shown in b). …"

Validation of image processing steps and metric results using images of a microfluidic device. حسب Gavrielle R. Untracht (11820311)

Flowchart of software workflow. حسب Gavrielle R. Untracht (11820311)

Flowchart scheme of the ML-based model. حسب Noshaba Qasmi (20405009)

"…<b>J)</b> Optimization of hyperparameter tuning. <b>K)</b> Algorithm selection from all models. …"

Segmentation, trace denoising and spike extraction framework. حسب Changjia Cai (10647521)

Data_Sheet_1_Alzheimer’s Disease Diagnosis and Biomarker Analysis Using Resting-State Functional MRI Functional Brain Network With Multi-Measures Features and Hippocampal Subfield... حسب Uttam Khatri (12689072)

PathOlOgics_RBCs Python Scripts.zip حسب Ahmed Elsafty (16943883)

"…</p><p dir="ltr">In terms of classification, a second algorithm was developed and employed to preliminary sort or group the individual cells (after excluding the overlapping cells manually) into different categories using five geometric measurements applied to the extracted contour from each binary image mask (see PathOlOgics_script_2; preliminary shape measurements). …"