S1 Code - by Gaosha Li (20570760)

A* Path-Finding Algorithm to Determine Cell Connections by Max Weng (22327159)

“…To address this, the research integrates a modified A* pathfinding algorithm with a U-Net convolutional neural network, a custom statistical binary classification method, and a personalized Min-Max connectivity threshold to automate the detection of astrocyte connectivity.…”

Data_Sheet_2_Computational Neural Modeling of Auditory Cortical Receptive Fields.pdf by Jordan D. Chambers (6732224)

Data_Sheet_1_Computational Neural Modeling of Auditory Cortical Receptive Fields.PDF by Jordan D. Chambers (6732224)

Data_Sheet_3_Computational Neural Modeling of Auditory Cortical Receptive Fields.PDF by Jordan D. Chambers (6732224)

Table_1_Screening of Long Non-coding RNAs Biomarkers for the Diagnosis of Tuberculosis and Preliminary Construction of a Clinical Diagnosis Model.docx by Juli Chen (12187358)

“…Background<p>Pathogenic testing for tuberculosis (TB) is not yet sufficient for early and differential clinical diagnosis; thus, we investigated the potential of screening long non-coding RNAs (lncRNAs) from human hosts and using machine learning (ML) algorithms combined with electronic health record (EHR) metrics to construct a diagnostic model.…”

Malware detection workflow in compressed archives by Paul A. Gagniuc (1818325)

Distributions of model parameters mirror differentially expressed ion channel genes. by Daniele Linaro (227790)

Flowchart scheme of the ML-based model. by Noshaba Qasmi (20405009)

“…<b>I)</b> Testing data consisting of 20% of the entire dataset. <b>J)</b> Optimization of hyperparameter tuning. <b>K)</b> Algorithm selection from all models. …”

Schematic representation of semi-automated algorithm for organoids analyzing. by Anna Demchenko (18449439)

Input features. by Nicola Lazzarini (3528197)

Baseline characteristics of patients in the study cohort. by Nicola Lazzarini (3528197)

ECE6379_PSOM.zip by Xingpeng Li (11825663)

“…Optimization algorithms that are commonly used to solve these problems will also be covered including linear programming, mixed-integer linear programming, Lagrange relaxation, dynamic programming, branch and bound, and duality theory.…”

Symmetry test result. by Jiyong Moon (16819302)

Algoritmo de clasificación de expresiones de odio por tipos en español (Algorithm for classifying hate expressions by type in Spanish) by Daniel Pérez Palau (11097348)

“…</p><h2>Model Architecture</h2><p dir="ltr">The model is based on <code>pysentimiento/robertuito-base-uncased</code> with the following modifications:</p><ul><li>A dense classification layer was added over the base model</li><li>Uses input IDs and attention masks as inputs</li><li>Generates a multi-class classification with 5 hate categories</li></ul><h2>Dataset</h2><p dir="ltr"><b>HATEMEDIA Dataset</b>: Custom hate speech dataset with categorization by type:</p><ul><li><b>Labels</b>: 5 hate type categories (0-4)</li><li><b>Preprocessing</b>:</li><li>Null values ​​removed from text and labels</li><li>Reindexing and relabeling (original labels are adjusted by subtracting 1)</li><li>Exclusion of category 2 during training</li><li>Conversion of category 5 to category 2</li></ul><h2>Training Process</h2><h3>Configuration</h3><ul><li><b>Batch size</b>: 128</li><li><b>Epoches</b>: 5</li><li><b>Learning rate</b>: 2e-5 with 10% warmup steps</li><li><b>Early stopping</b> with patience=2</li><li><b>Class weights</b>: Balanced to handle class imbalance</li></ul><h3>Custom Metrics</h3><ul><li>Recall for specific classes (focus on class 2)</li><li>Precision for specific classes (focus on class 3)</li><li>F1-score (weighted)</li><li>AUC-PR</li><li>Recall at precision=0.6 (class 3)</li><li>Precision at recall=0.6 (class 2)</li></ul><h2>Evaluation Metrics</h2><p dir="ltr">The model is evaluated using:</p><ul><li>Macro recall, precision, and F1-score</li><li>One-vs-Rest AUC</li><li>Accuracy</li><li>Per-class metrics</li><li>Confusion matrix</li><li>Full classification report</li></ul><h2>Technical Features</h2><h3>Data Preprocessing</h3><ul><li><b>Tokenization</b>: Maximum length of 128 tokens (truncation and padding)</li><li><b>Encoding of labels</b>: One-hot encoding for multi-class classification</li><li><b>Data split</b>: 80% training, 10% validation, 10% testing</li></ul><h3>Optimization</h3><ul><li><b>Optimizer</b>: Adam with linear warmup scheduling</li><li><b>Loss function</b>: Categorical Crossentropy (from_logits=True)</li><li><b>Imbalance handling</b>: Class weights computed automatically</li></ul><h2>Requirements</h2><p dir="ltr">The following Python packages are required:</p><ul><li>TensorFlow</li><li>Transformers</li><li>scikit-learn</li><li>pandas</li><li>datasets</li><li>matplotlib</li><li>seaborn</li><li>numpy</li></ul><h2>Usage</h2><ol><li><b>Data format</b>:</li></ol><ul><li>CSV file or Pandas DataFrame</li><li>Required column name: <code>text</code> (string type)</li><li>Required column name: Data type label (integer type, 0-4) - optional for evaluation</li></ul><ol><li><b>Text preprocessing</b>:</li></ol><ul><li>Automatic tokenization with a maximum length of 128 tokens</li><li>Long texts will be automatically truncated</li><li>Handling of special characters, URLs, and emojis included</li></ul><ol><li><b>Label encoding</b>:</li></ol><ul><li>The model classifies hate speech into 5 categories (0-4)</li><li><code>0</code>: Political hatred: Expressions directed against individuals or groups based on political orientation.…”

Data_Sheet_1_Early Prediction of Sepsis in the ICU Using Machine Learning: A Systematic Review.PDF by Michael Moor (10887888)

Flowchart of software workflow. by Gavrielle R. Untracht (11820311)

Steps in the extraction of 14 coordinates from the CT slices for the curved MPR. by Linus Woitke (22783534)

“…Protruding paths are then eliminated using graph-based optimization algorithms, as demonstrated in f). …”

IUTF Dataset(Enhanced): Enabling Cross-Border Resource for Analysing the Impact of Rainfall on Urban Transportation Systems by Xuhui Lin (19505503)

“…</p><p dir="ltr"><b>Quality Assurance</b>: Comprehensive technical validation demonstrates the dataset's integrity, sensitivity to rainfall impacts, and capability to reveal complex traffic-weather interaction patterns.</p><h2>Data Structure</h2><p dir="ltr">The dataset is organized into four primary components:</p><ol><li><b>Road Network Data</b>: Topological representations including spatial geometry, functional classification, and connectivity information</li><li><b>Traffic Sensor Data</b>: Sensor metadata, locations, and measurements at both 5-minute and hourly resolutions</li><li><b>Precipitation Data</b>: Hourly meteorological information with spatial grid cell metadata</li><li><b>Derived Analytical Matrices</b>: Pre-computed structures for advanced spatial-temporal modelling and network analyses</li></ol><h2>File Formats</h2><ul><li><b>Tabular Data</b>: Apache Parquet format for optimal compression and fast query performance</li><li><b>Numerical Matrices</b>: NumPy NPZ format for efficient scientific computing</li><li><b>Total Size</b>: Approximately 2 GB uncompressed</li></ul><h2>Applications</h2><p dir="ltr">The IUTF dataset enables diverse analytical applications including:</p><ul><li><b>Traffic Flow Prediction</b>: Developing weather-aware traffic forecasting models</li><li><b>Infrastructure Planning</b>: Identifying vulnerable network components and prioritizing investments</li><li><b>Resilience Assessment</b>: Quantifying system recovery curves, robustness metrics, and adaptive capacity</li><li><b>Climate Adaptation</b>: Supporting evidence-based transportation planning under changing precipitation patterns</li><li><b>Emergency Management</b>: Improving response strategies for weather-related traffic disruptions</li></ul><h2>Methodology</h2><p dir="ltr">The dataset creation involved three main stages:</p><ol><li><b>Data Collection</b>: Sourcing traffic data from UTD19, road networks from OpenStreetMap, and precipitation data from ERA5 reanalysis</li><li><b>Spatio-Temporal Harmonization</b>: Comprehensive integration using novel algorithms for spatial alignment and temporal synchronization</li><li><b>Quality Assurance</b>: Rigorous validation and technical verification across all cities and data components</li></ol><h2>Code Availability</h2><p dir="ltr">Processing code is available at: https://github.com/viviRG2024/IUTDF_processing</p>…”

Table_1_Early Prediction of Sepsis in the ICU Using Machine Learning: A Systematic Review.pdf by Michael Moor (10887888)