A Practical Algorithm to Solve the Near-Congruence Problem for Rigid Molecules and Clusters by José Manuel Vásquez-Pérez (12843737)

“…The algorithm is formulated as a quasi-local optimization procedure with each optimization step involving a linear assignment (LAP) and a singular value decomposition (SVD). …”

Using Variable Data-Independent Acquisition for Capillary Electrophoresis-Based Untargeted Metabolomics by Saki Kiuchi (19374255)

“…Capillary electrophoresis coupled with tandem mass spectrometry (CE-MS/MS) offers advantages in peak capacity and sensitivity for metabolic profiling owing to the electroosmotic flow-based separation. However, the utilization of data-independent MS/MS acquisition (DIA) is restricted due to the absence of an optimal procedure for analytical chemistry and its related informatics framework. …”

Using Variable Data-Independent Acquisition for Capillary Electrophoresis-Based Untargeted Metabolomics by Saki Kiuchi (19374255)

“…Capillary electrophoresis coupled with tandem mass spectrometry (CE-MS/MS) offers advantages in peak capacity and sensitivity for metabolic profiling owing to the electroosmotic flow-based separation. However, the utilization of data-independent MS/MS acquisition (DIA) is restricted due to the absence of an optimal procedure for analytical chemistry and its related informatics framework. …”

Improved support vector machine classification algorithm based on adaptive feature weight updating in the Hadoop cluster environment by Jianfang Cao (1881379)

“…<div><p>An image classification algorithm based on adaptive feature weight updating is proposed to address the low classification accuracy of the current single-feature classification algorithms and simple multifeature fusion algorithms. …”

LinearSolve.jl: because A\b is not good enough by Christopher Rackauckas (9197216)

“…What a great time for the SciML ecosystem to swoop in! This leads us to LinearSolve.jl, a common interface for linear solver libraries. …”

ECE6327_SmartGrid by Xingpeng Li (11825663)

Predictive Analysis of Mushroom Toxicity Based Exclusively on Their Natural Habitat. by Enrico Bertozzi (22461709)

“…Optimization with GridSearchCV corroborated this stagnation, identifying a simple linear model (C=0.05, gamma='scale') as the optimal configuration, indicating that the additional complexity of nonlinear kernels did not confer predictive gains. …”

Supporting data for "clinical-oriented surgical planning based on finite element method and automate-generated surgical templates assisting the spinal surgery" by Tianchi Wu (11062323)

“…The offset algorithm was developed with normal vector of vertices and iterative bisection, outputting a solid layer of elements based on input triangle mesh and was validated against non-linear surface in vertebra body. …”

hIPPYlib: An Extensible Software Framework for Large-scale Inverse Problems by Olalekan A. Babaniyi (767286)

“…This Gaussian approximation is exact when the parameter-to-observable map is linear; otherwise it can serve as a proposal for Hessian-based MCMC methods. …”

Collaborative Research: SI2-SSI: ELSI-Infrastructure for Scalable Electronic Structure Theory by Volker Blum (3683170)

“…The ELectronic Structure Infrastructure (ELSI) project provides an open-source software interface to facilitate the implementation and optimal use of high-performance solver libraries covering cubic scaling eigensolvers, linear scaling density-matrix-based algorithms, and other reduced scaling methods in between. …”

Collaborative Research: SI2-SSI: ELSI - Infrastructure for Scalable Electronic Structure Theory by Volker Blum (3683170)

“…The ELectronic Structure Infrastructure (ELSI) project provides an open-source software interface to facilitate the implementation and optimal use of high-performance solver libraries covering cubic scaling eigensolvers, linear scaling density-matrix-based algorithms, and other reduced scaling methods in between. …”

Code by Baoqiang Chen (21099509)

“…We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …”

Core data by Baoqiang Chen (21099509)

“…We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …”

An Ecological Benchmark of Photo Editing Software: A Comparative Analysis of Local vs. Cloud Workflows by Pierre-Alexis DELAROCHE (22092572)

“…Performance Profiling Algorithms Energy Measurement Methodology # Pseudo-algorithmic representation of measurement protocol def capture_energy_metrics(workflow_type: WorkflowEnum, asset_vector: List[PhotoAsset]) -> EnergyProfile: baseline_power = sample_idle_power_draw(duration=30) with PowerMonitoringContext() as pmc: start_timestamp = rdtsc() # Read time-stamp counter if workflow_type == WorkflowEnum.LOCAL: result = execute_local_pipeline(asset_vector) elif workflow_type == WorkflowEnum.CLOUD: result = execute_cloud_pipeline(asset_vector) end_timestamp = rdtsc() energy_profile = EnergyProfile( duration=cycles_to_seconds(end_timestamp - start_timestamp), peak_power=pmc.get_peak_consumption(), average_power=pmc.get_mean_consumption(), total_energy=integrate_power_curve(pmc.get_power_trace()) ) return energy_profile Statistical Analysis Framework Our analytical pipeline employs advanced statistical methodologies including: Variance Decomposition: ANOVA with nested factors for hardware configuration effects Regression Analysis: Generalized Linear Models (GLM) with log-link functions for energy modeling Temporal Analysis: Fourier transform-based frequency domain analysis of power consumption patterns Cluster Analysis: K-means clustering with Euclidean distance metrics for workflow classification Data Validation and Quality Assurance Measurement Uncertainty Quantification All energy measurements incorporate systematic and random error propagation analysis: Instrument Precision: ±0.1W for CPU power, ±0.5W for GPU power Temporal Resolution: 1ms sampling with Nyquist frequency considerations Calibration Protocol: NIST-traceable power standards with periodic recalibration Environmental Controls: Temperature-compensated measurements in climate-controlled facility Outlier Detection Algorithms Statistical outliers are identified using the Interquartile Range (IQR) method with Tukey's fence criteria (Q₁ - 1.5×IQR, Q₃ + 1.5×IQR). …”

<b>AI for imaging plant stress in invasive species </b>(dataset from the article https://doi.org/10.1093/aob/mcaf043) by Erola Fenollosa (20977421)

“…The described extracted features were used to predict leaf betalain content (µg per FW) using multiple machine learning regression algorithms (Linear regression, Ridge regression, Gradient boosting, Decision tree, Random forest and Support vector machine) using the <i>Scikit-learn</i> 1.2.1 library in Python (v.3.10.1) (list of hyperparameters used is given in <a href="#sup1" target="_blank">Supplementary Data S5</a>). …”