Supplementary Material for: Penalized Logistic Regression Analysis for Genetic Association Studies of Binary Phenotypes by Yu Y. (3096192)

“…We consider two approximate approaches to maximizing the marginal likelihood: (i) a Monte Carlo EM algorithm (MCEM) and (ii) a Laplace approximation (LA) to each integral, followed by derivative-free optimization of the approximation. …”

GSE96058 information. by Sepideh Zununi Vahed (9861298)

“…Subsequently, feature selection was conducted using ANOVA and binary Particle Swarm Optimization (PSO). …”

The performance of classifiers. by Sepideh Zununi Vahed (9861298)

“…Subsequently, feature selection was conducted using ANOVA and binary Particle Swarm Optimization (PSO). …”

Spontaneous ERG-based random forest model discriminates control and disease cases in rodent models of obesity and type 1 diabetes and predicts disease evolution in the type 1 diabe... by Ramsés Noguez Imm (6658637)

UK Biobank data wrangling statistics and results. by Simeone Marino (81051)

Surround Suppression mechanism. by Elnaz Nemati (21402730)

Thesis-RAMIS-Figs_Slides by Felipe Santibañez-Leal (10967991)

“…In the context of facies recovery using simulations, the task of optimal sampling is formalized and addressed using a maximum information extraction criterion. …”

Natural language processing for automated quantification of bone metastases reported in free-text bone scintigraphy reports by Olivier Q. Groot (9370461)

“…At the same threshold, the NLP algorithm had a positive predictive value of 0.97 and F1-score of 0.96.…”

DataSheet_1_Multi-Parametric MRI-Based Radiomics Models for Predicting Molecular Subtype and Androgen Receptor Expression in Breast Cancer.docx by Yuhong Huang (115702)

“…We applied several feature selection strategies including the least absolute shrinkage and selection operator (LASSO), and recursive feature elimination (RFE), the maximum relevance minimum redundancy (mRMR), Boruta and Pearson correlation analysis, to select the most optimal features. We then built 120 diagnostic models using distinct classification algorithms and feature sets divided by MRI sequences and selection strategies to predict molecular subtype and AR expression of breast cancer in the testing dataset of leave-one-out cross-validation (LOOCV). …”

Sample image for illustration. by Indhumathi S. (19173013)

“…This article introduces a Convex Based Feature Descriptor (CBFD) system designed to withstand rotation, lighting, and blur variations while remaining computationally efficient. …”

Comparison analysis of computation time. by Indhumathi S. (19173013)

“…This article introduces a Convex Based Feature Descriptor (CBFD) system designed to withstand rotation, lighting, and blur variations while remaining computationally efficient. …”

Process flow diagram of CBFD. by Indhumathi S. (19173013)

“…This article introduces a Convex Based Feature Descriptor (CBFD) system designed to withstand rotation, lighting, and blur variations while remaining computationally efficient. …”

Precision recall curve. by Indhumathi S. (19173013)

“…This article introduces a Convex Based Feature Descriptor (CBFD) system designed to withstand rotation, lighting, and blur variations while remaining computationally efficient. …”

Quadratic polynomial in 2D image plane. by Indhumathi S. (19173013)

“…This article introduces a Convex Based Feature Descriptor (CBFD) system designed to withstand rotation, lighting, and blur variations while remaining computationally efficient. …”

Flow diagram of the automatic animal detection and background reconstruction. by David Tadres (9120564)

“…For the region that the animal has left since the first frame, the pixel values are positive (green). (E) The threshold value is calculated based on the histogram: it is the mean of the image subtracted by 4 (optimal value defined by trial and error). …”

DataSheet_1_Near infrared spectroscopy for cooking time classification of cassava genotypes.docx by Massaine Bandeira e Sousa (7866242)

“…Classification of genotypes was carried out using the K-nearest neighbor algorithm (KNN) and partial least squares (PLS) models. …”

Table_1_Near infrared spectroscopy for cooking time classification of cassava genotypes.docx by Massaine Bandeira e Sousa (7866242)

“…Classification of genotypes was carried out using the K-nearest neighbor algorithm (KNN) and partial least squares (PLS) models. …”

Seed mix selection model by Bethanne Bruninga-Socolar (10923639)

“…</p> <p>  </p> <p>We applied the seed mix selection model using a binary genetic algorithm to select seed mixes (R package ‘GA’; Scrucca 2013; Scrucca 2017). …”

Machine Learning-Ready Dataset for Cytotoxicity Prediction of Metal Oxide Nanoparticles by Soham Savarkar (21811825)

“…</p><p dir="ltr">IC50 (µg/mL): The concentration at which 50% of cells are inhibited, used as a toxicity threshold.</p><p dir="ltr">These biological metrics were used to define a binary toxicity label: entries were classified as toxic (1) or non-toxic (0) based on thresholds from standardized guidelines (e.g., ISO 10993-5:2009) and literature consensus. …”

Data_Sheet_1_A Data-Driven Framework for Identifying Intensive Care Unit Admissions Colonized With Multidrug-Resistant Organisms.docx by Çaǧlar Çaǧlayan (12253934)

“…We performed threshold optimization for converting predicted probabilities into binary predictions and identified the cut-off maximizing the sum of sensitivity and specificity.…”