Showing 1 - 20 results of 29 for search '(( binary wave model optimization algorithm ) OR ( library based protein optimization algorithm ))', query time: 0.61s Refine Results
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    RosettaAMRLD: A Reaction-Driven Approach for Structure-Based Drug Design from Combinatorial Libraries with Monte Carlo Metropolis Algorithms by Yidan Tang (6623693)

    Published 2025
    “…By leveraging combinatorial ultralarge libraries, RosettaAMRLD ensures synthetic accessibility, optimizing protein–ligand interactions while efficiently sampling accessible chemical space. …”
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    Data_Sheet_1_Pneumonia detection by binary classification: classical, quantum, and hybrid approaches for support vector machine (SVM).pdf by Sai Sakunthala Guddanti (17739363)

    Published 2024
    “…A support vector machine (SVM) is attractive because binary classification can be represented as an optimization problem, in particular as a Quadratic Unconstrained Binary Optimization (QUBO) model, which, in turn, maps naturally to an Ising model, thereby making annealing—classical, quantum, and hybrid—an attractive approach to explore. …”
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    Optimal 8-mer and 9-mer SARS-CoV-2 epitope identification. by Mariah Hassert (5746874)

    Published 2020
    “…Peptide sequences are named based on the protein they are contained within, followed by the number of the first amino acid residue of the peptide in the context of the full protein, to the last amino acid residue. potential optimal 8-mer or 9-mer CD8+ T cell epitopes were predicted. …”
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    MCLP_quantum_annealer_V0.5 by Anonymous Anonymous (4854526)

    Published 2025
    “…Theoretical and applied experiments are conducted using four solvers: QBSolv, D-Wave Hybrid binary quadratic model 2, D-Wave Advantage system 4.1, and Gurobi. …”
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    Distribution of Bound Conformations in Conformational Ensembles for X‑ray Ligands Predicted by the ANI-2X Machine Learning Potential by Fengyang Han (14613218)

    Published 2023
    “…This information is useful to guide the construction of libraries for shape-based virtual screening and to improve the docking algorithm to efficiently sample bound conformations.…”
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    Distribution of Bound Conformations in Conformational Ensembles for X‑ray Ligands Predicted by the ANI-2X Machine Learning Potential by Fengyang Han (14613218)

    Published 2023
    “…This information is useful to guide the construction of libraries for shape-based virtual screening and to improve the docking algorithm to efficiently sample bound conformations.…”
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    DataSheet1_Quantum-assisted fragment-based automated structure generator (QFASG) for small molecule design: an in vitro study.docx by Sergei Evteev (18294157)

    Published 2024
    “…</p><p>Methods: We developed Quantum-assisted Fragment-based Automated Structure Generator (QFASG), a fully automated algorithm designed to construct ligands for a target protein using a library of molecular fragments. …”
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