<b>Tian_et al_2025</b> by Tao Chen (16904529)

Datafiles and R script for analyses and figures for submitted manuscript titled: Loss of dominant tree-mycorrhizal mutualism increases soil fungal diversity and alters community st... by Lindsay McCulloch (8565423)

“…Fungal alpha diversity was significantly greater in the OG₁₀₀ and OG₅₀ compared to the control, largely driven by decreased ECM abundance and increased saprophytic fungal abundance in OG₁₀₀ and OG₅₀. …”

Acoustics of breath noises in human speech (Werner et al., 2024) by Raphael Werner (17350943)

“…Results for the VT models suggest that airflow direction is crucial for spectral properties of sibilants, /ç/, and /i:/, but not the other sounds we investigated. …”

Effects of Nash equilibrium attack and defense behaviors with the sensory–motor algorithm on encounters, agent numbers, and payoffs. by Hiroyuki Ichijo (13891153)

“…<b>Dg</b> shows a bar plot illustrating the effect of <i>c</i>_<i>b</i> on switching behavior, with percentages of switching for different values of <i>c</i>_<i>b</i> and <i>r</i>. …”

CRISPR/Cas9-mediated editing of barley lipoxygenase genes promotes grain fatty acid accumulation and storability by Zhanghui Zeng (3571331)

“…Notably, the total LOX activity in mature grains decreased by 36–42% in <i>loxC1</i> mutants and by 94% in <i>loxAloxC1</i> mutants, with no significant change observed in <i>loxB</i> mutants. …”

Dietary iron attenuates <i>Clostridioides difficile</i> infection via modulation of intestinal immune response and gut microbiota by Xiao Li (107004)

“…Host vulnerability to <i>C. difficile</i> infection (CDI) is largely affected by gut microbiota, which in turn is influenced by diet. …”

Over-expression of Fas2 in the wing imaginal disc causes an EGFR-dependent reduction in organ size. by Luis Garcia-Alonso (152388)

“…Note also the perfect match in the most anterior region of the wing with the blue outline of the control wing on top. (C) <i>MS1096-GAL4</i> driven over-expression of Fas2 causes a dose-dependent wing size reduction. …”

data.xlsx by Juanjuan cui (22072841)

“…However, changes in ecosystem C:N:P stoichiometry during nabkhas development remain largely unclear, limiting insights into nutrient cycling and potential nutrient constraints. …”

Weight gain was associated with worsening glycemia and cardiovascular and kidney outcomes in type 2 diabetes patients independent of diabetes medication in the GRADE Randomized Con... by Deborah J. Wexler (492527)

“…Thereafter, weight decreased in all groups. Weight gain within the first six months was associated with increased risk of HbA1c>7.5%, with modest differences by treatment, and with subsequent CVD (HR 1.03 [1.005, 1.06]). …”

Update on trimethylamine N-oxide (TMAO) as a piezolyte and cryoprotectant: its role in a depth limit for marine fishes and loss from hadal fish during capture by Paul Yancey (14354982)

“…</p><p dir="ltr">Jamieson AJ, Yancey PH (2012). doi/10.1086/BBLv222n3p171</p><p dir="ltr">Lantz C, Xi Z, Rider RL, Walker TE, Hebert M, Russell DH (2024). doi.org/10.1021/acs.jpcb.4c04951</p><p dir="ltr">Laurent H, Youngs TGA, Headen TF, Soper AK, Dougan L (2022). doi.org/10.1038/s42004-022-00726-z</p><p dir="ltr">Li X, Wang C, Yanagita T, Xue C, Zhang T, Wang Y (2024). doi.org/10.1021/acs.jafc.4c01974</p><p dir="ltr">Linley T, Gerringer M, Yancey PH, Drazen JC, Weinstock C, Jamieson A (2016). doi.org/10.1016/j.dsr.2016.05.003</p><p dir="ltr">Liu Q, Jiang S, Li W, Pan B, Xu Q (2022). doi.org/10.3390/jmse10040454</p><p dir="ltr">Liu T-H, Okuno M (2024). doi.org/10.1039/D4CP01025F</p><p dir="ltr">Loo RL, Chan Q, Nicholson JK, Holmes E (2022). doi.org/10.1021/acs.jproteome.1c00851</p><p dir="ltr">Mueller-Dieckmann C, Kauffmann B, Weiss MS (2011). doi.org/10.1107/S0021889811000</p><p dir="ltr">Mu Y, Bian C, Liu R, Wang Y, Shao G, Li J, et al. (2021). doi.org/10.1371/journal.pgen.1009530</p><p dir="ltr">Raymond JA, Devries AL (1998). doi.org/10.1023/a:1007778728627</p><p dir="ltr">Raymond JA, Hassel A (2005). doi.org/10.1111/j.1095-8649.2000.tb02240.x</p><p dir="ltr">Roche J, Royer CA (2018). doi.org/10.1098/rsif.2018.0244</p><p dir="ltr">Samerotte AL, Drazen JC, Brand GL, Seibel BA, Yancey PH (2007). doi/10.1086/510566</p><p dir="ltr">Swan JA, Jamieson AJ, Linley TD, Yancey PH (2021). doi.org/10.1093/jcbiol/ruaa102</p><p dir="ltr">Treberg JR, Bystriansky JS, Driedzic WR (2005). doi.org/10.1002/jez.a.140</p><p dir="ltr">Wang K, Shen Y, Yang Y, Gan X, Liu G, Hu K, et al. (2019). doi.org/10.1038/s41559-019-0864-8</p><p dir="ltr">Xu H, Fang C, Xu W, Wang C, Song Y, Zhu C, et al. (2025). doi.org/10.1016/j.cell.2025.01.002</p><p dir="ltr">Yancey PH, Speers-Roesch B, Atchison A, Reist JD., Treberg JR (2018). doi.org/10.1086/696157</p><p dir="ltr">Yancey PH (2020). doi.org/10.1002/jez.2354</p><p dir="ltr">Yancey PH (2023). doi/10.33594/000000661</p>…”

Image 3_Single-cell and spatial transcriptomics reveal correlation between RNA methylation-related miRNA risk model and immune infiltration in hepatocellular carcinoma.tif by Rong Su (2210740)

“…The data integration of scRNA-seq and bulk RNA-seq showed the decreased TIDE score in the high-risk patients and the elevated levels of Macro-secreted phosphoprotein 1 (SPP1), MDSC-meiotic nuclear divisions 1 (MND1), γδ T cells, and Macro-complement C1q C chain (C1QC) predicted adverse prognosis. …”

Image 2_Single-cell and spatial transcriptomics reveal correlation between RNA methylation-related miRNA risk model and immune infiltration in hepatocellular carcinoma.tif by Rong Su (2210740)

“…The data integration of scRNA-seq and bulk RNA-seq showed the decreased TIDE score in the high-risk patients and the elevated levels of Macro-secreted phosphoprotein 1 (SPP1), MDSC-meiotic nuclear divisions 1 (MND1), γδ T cells, and Macro-complement C1q C chain (C1QC) predicted adverse prognosis. …”

Image 1_Single-cell and spatial transcriptomics reveal correlation between RNA methylation-related miRNA risk model and immune infiltration in hepatocellular carcinoma.tif by Rong Su (2210740)

“…The data integration of scRNA-seq and bulk RNA-seq showed the decreased TIDE score in the high-risk patients and the elevated levels of Macro-secreted phosphoprotein 1 (SPP1), MDSC-meiotic nuclear divisions 1 (MND1), γδ T cells, and Macro-complement C1q C chain (C1QC) predicted adverse prognosis. …”

Table 2_Single-cell and spatial transcriptomics reveal correlation between RNA methylation-related miRNA risk model and immune infiltration in hepatocellular carcinoma.xlsx by Rong Su (2210740)

“…The data integration of scRNA-seq and bulk RNA-seq showed the decreased TIDE score in the high-risk patients and the elevated levels of Macro-secreted phosphoprotein 1 (SPP1), MDSC-meiotic nuclear divisions 1 (MND1), γδ T cells, and Macro-complement C1q C chain (C1QC) predicted adverse prognosis. …”

Image 4_Single-cell and spatial transcriptomics reveal correlation between RNA methylation-related miRNA risk model and immune infiltration in hepatocellular carcinoma.tif by Rong Su (2210740)

“…The data integration of scRNA-seq and bulk RNA-seq showed the decreased TIDE score in the high-risk patients and the elevated levels of Macro-secreted phosphoprotein 1 (SPP1), MDSC-meiotic nuclear divisions 1 (MND1), γδ T cells, and Macro-complement C1q C chain (C1QC) predicted adverse prognosis. …”

Table 1_Single-cell and spatial transcriptomics reveal correlation between RNA methylation-related miRNA risk model and immune infiltration in hepatocellular carcinoma.xlsx by Rong Su (2210740)

“…The data integration of scRNA-seq and bulk RNA-seq showed the decreased TIDE score in the high-risk patients and the elevated levels of Macro-secreted phosphoprotein 1 (SPP1), MDSC-meiotic nuclear divisions 1 (MND1), γδ T cells, and Macro-complement C1q C chain (C1QC) predicted adverse prognosis. …”

smFISH probe sequences used in this study. by Grace E. Johnson (21376787)

“…To define mechanisms underlying biofilm developmental transitions, we establish a single-molecule fluorescence in situ hybridization (smFISH) approach that enables accurate quantitation of spatiotemporal gene-expression patterns in biofilms at cell-scale resolution. smFISH analyses of <i>V. cholerae</i> biofilm regulatory and structural genes demonstrate that, as biofilms mature, overall matrix gene expression decreases, and simultaneously, a pattern emerges in which matrix gene expression becomes largely confined to peripheral biofilm cells. …”

Strains used in this study. by Grace E. Johnson (21376787)

“…To define mechanisms underlying biofilm developmental transitions, we establish a single-molecule fluorescence in situ hybridization (smFISH) approach that enables accurate quantitation of spatiotemporal gene-expression patterns in biofilms at cell-scale resolution. smFISH analyses of <i>V. cholerae</i> biofilm regulatory and structural genes demonstrate that, as biofilms mature, overall matrix gene expression decreases, and simultaneously, a pattern emerges in which matrix gene expression becomes largely confined to peripheral biofilm cells. …”

Inactivation of Topo IV leads to a specific inability to replicate the terminus region of the chromosome. by Parisa D. Mokhtari (22209097)

“…<p>Replication profiles of growing wild-type, <i><i>gyrB</i></i>^ts, and <i><i>parE</i></i>^ts cells are plotted at 0, 1.5, and 3 hrs after temperature shift from 30°C to 43°C. In actively growing wild-type cultures, the copy number of sequences decreases inversely with distance from the origin until reaching the terminus region. …”

Impact of Carbene Ligands on the Properties and Reactivity of Diazoboranes by Chonghe Zhang (10798948)