Table 1_Single-cell and spatial transcriptomics reveal correlation between RNA methylation-related miRNA risk model and immune infiltration in hepatocellular carcinoma.xlsx by Rong Su (2210740)

“…The data integration of scRNA-seq and bulk RNA-seq showed the decreased TIDE score in the high-risk patients and the elevated levels of Macro-secreted phosphoprotein 1 (SPP1), MDSC-meiotic nuclear divisions 1 (MND1), γδ T cells, and Macro-complement C1q C chain (C1QC) predicted adverse prognosis. …”

smFISH probe sequences used in this study. by Grace E. Johnson (21376787)

“…To define mechanisms underlying biofilm developmental transitions, we establish a single-molecule fluorescence in situ hybridization (smFISH) approach that enables accurate quantitation of spatiotemporal gene-expression patterns in biofilms at cell-scale resolution. smFISH analyses of <i>V. cholerae</i> biofilm regulatory and structural genes demonstrate that, as biofilms mature, overall matrix gene expression decreases, and simultaneously, a pattern emerges in which matrix gene expression becomes largely confined to peripheral biofilm cells. …”

Strains used in this study. by Grace E. Johnson (21376787)

“…To define mechanisms underlying biofilm developmental transitions, we establish a single-molecule fluorescence in situ hybridization (smFISH) approach that enables accurate quantitation of spatiotemporal gene-expression patterns in biofilms at cell-scale resolution. smFISH analyses of <i>V. cholerae</i> biofilm regulatory and structural genes demonstrate that, as biofilms mature, overall matrix gene expression decreases, and simultaneously, a pattern emerges in which matrix gene expression becomes largely confined to peripheral biofilm cells. …”

Inactivation of Topo IV leads to a specific inability to replicate the terminus region of the chromosome. by Parisa D. Mokhtari (22209097)

“…<p>Replication profiles of growing wild-type, <i><i>gyrB</i></i>^ts, and <i><i>parE</i></i>^ts cells are plotted at 0, 1.5, and 3 hrs after temperature shift from 30°C to 43°C. In actively growing wild-type cultures, the copy number of sequences decreases inversely with distance from the origin until reaching the terminus region. …”

Impact of Carbene Ligands on the Properties and Reactivity of Diazoboranes by Chonghe Zhang (10798948)

Data Sheet 1_Sodium-glucose cotransporter 2 inhibitors—but not insulin—enhance renal branched-chain amino acid catabolism.docx by Moeko Sakamoto (22578098)

“…In contrast, C4 carnitine (an earlier metabolite in valine catabolism) rose more with insulin. …”

Data Sheet 1_Formate addition enhanced hydrogen production by Thermococcus paralvinellae when grown on brewery wastewater.pdf by Harita Sistu (20893940)

“…T. paralvinellae was grown at 80°C on maltose only (a model brewery wastewater), formate only, and maltose plus formate media as well as brewery wastewater with and without the addition of formate. …”

<b>Role of the Chaperone ClpB in</b><b> </b><b>Mycoplasma bovis</b><b> Virulence: Implications for </b><b>stress response, a</b><b>dhesion, </b><b>b</b><b>iofilm </b><b>d</b><b>eve... by Hui zhang (22187170)

“…Through genome-wide transposon mutagenesis of the M. bovis HB0801 strain, we generated ClpB-deficient mutants that maintained normal growth kinetics and morphology at 37°C but exhibited significant growth defects under thermal (42°C) and osmotic stress conditions. …”

Transcriptomics-Driven Discovery of New Meroterpenoid Rhynchospenes Involved in the Virulence of the Barley Pathogen <i>Rhynchosporium commune</i> by Reynaldi Darma (20713741)

Supplementary file 1_Multimodal monitoring of neutrophil activity during cardiac surgery.pdf by Darko Jovanovski (20872811)

“…Neutrophil activation occurred intraoperatively and preceded the upregulation of conventional inflammatory markers such as C-reactive protein and interleukin-6. Perioperatively, neutrophils maintained a stable response to platelet-activating factor (PAF) with regard to CD11b and CD66b expression but showed a decreased response in CD10. …”

Data Sheet 1_Multimodal monitoring of neutrophil activity during cardiac surgery.pdf by Darko Jovanovski (20872811)

“…Neutrophil activation occurred intraoperatively and preceded the upregulation of conventional inflammatory markers such as C-reactive protein and interleukin-6. Perioperatively, neutrophils maintained a stable response to platelet-activating factor (PAF) with regard to CD11b and CD66b expression but showed a decreased response in CD10. …”

Table 1_The immune receptor XA21 causes semi-male sterility and grain loss in rice.xlsx by Beatriz de Toledo Franceschi (22589708)

“…Here, we demonstrate that Xa21 expression causes drastic fertility defects, including reduced pollen viability, impaired anther dehiscence, and severe grain loss, at a low temperature (24°C) and in a dose-dependent manner. Under such growth conditions, Xa21 plants displayed abundant accumulation of reactive oxygen species in their anthers and decreased expression of genes related to jasmonate biosynthesis, signaling, and response in their spikelets during anthesis. …”

Table 2_The immune receptor XA21 causes semi-male sterility and grain loss in rice.xlsx by Beatriz de Toledo Franceschi (22589708)

“…Here, we demonstrate that Xa21 expression causes drastic fertility defects, including reduced pollen viability, impaired anther dehiscence, and severe grain loss, at a low temperature (24°C) and in a dose-dependent manner. Under such growth conditions, Xa21 plants displayed abundant accumulation of reactive oxygen species in their anthers and decreased expression of genes related to jasmonate biosynthesis, signaling, and response in their spikelets during anthesis. …”

The regulation of AsfR on tmRNA expression mediates bacterial motility and virulence by Huimin Chang (21142907)

“…However, the upstream regulatory mechanisms that regulate tmRNA expression remain largely unexplored. In this study, AraC superfamily regulator (AsfR) was found to directly interact with the promoter of <i>ssrA</i> gene, which encodes tmRNA. …”

Image 2_The immune receptor XA21 causes semi-male sterility and grain loss in rice.tif by Beatriz de Toledo Franceschi (22589708)

“…Here, we demonstrate that Xa21 expression causes drastic fertility defects, including reduced pollen viability, impaired anther dehiscence, and severe grain loss, at a low temperature (24°C) and in a dose-dependent manner. Under such growth conditions, Xa21 plants displayed abundant accumulation of reactive oxygen species in their anthers and decreased expression of genes related to jasmonate biosynthesis, signaling, and response in their spikelets during anthesis. …”

Image 1_The immune receptor XA21 causes semi-male sterility and grain loss in rice.tif by Beatriz de Toledo Franceschi (22589708)

“…Here, we demonstrate that Xa21 expression causes drastic fertility defects, including reduced pollen viability, impaired anther dehiscence, and severe grain loss, at a low temperature (24°C) and in a dose-dependent manner. Under such growth conditions, Xa21 plants displayed abundant accumulation of reactive oxygen species in their anthers and decreased expression of genes related to jasmonate biosynthesis, signaling, and response in their spikelets during anthesis. …”

Image 3_The immune receptor XA21 causes semi-male sterility and grain loss in rice.tif by Beatriz de Toledo Franceschi (22589708)

“…Here, we demonstrate that Xa21 expression causes drastic fertility defects, including reduced pollen viability, impaired anther dehiscence, and severe grain loss, at a low temperature (24°C) and in a dose-dependent manner. Under such growth conditions, Xa21 plants displayed abundant accumulation of reactive oxygen species in their anthers and decreased expression of genes related to jasmonate biosynthesis, signaling, and response in their spikelets during anthesis. …”

The regulation of AsfR on tmRNA expression mediates bacterial motility and virulence in <i>aeromonas veronii</i> by Huimin Chang (12537320)

“…However, the upstream regulatory mechanisms that regulate tmRNA expression remain largely unexplored. In this study, AraC superfamily regulator (AsfR) was found to directly interact with the promoter of <i>ssrA</i> gene, which encodes tmRNA. …”

LRIG1 and CDK6 expression in the lateral ventricular wall cells by Hyung-song Nam (8914220)

“…</p><p dir="ltr">Regardless, when cultures were initiated from FACS sorted LRIG1-T2A-tdTomato-low/neg CDK6-T2A-td-sfGFP-high/int cells (i.e., presumptive C type transit amplifying cells), they proliferated and formed large neurospheres in single cell or bulk cultures. …”

Image 1_Elevated growth [CO2] enhances heat stress resistance of photosynthesis in young leaves of avocado (Persea americana).png by Yusuph Olawale Abiola (22562519)

“…Light-saturated net assimilation rate (A) decreased with leaf age in both ambient and elevated [CO₂]. …”