ImproBR Replication Package حسب Anonymus (18533633)

"…<br><br>**Import Errors:**<br>Make sure you're in the replication package directory:<br>```bash<br>cd ImproBR-Replication<br>python improbr_pipeline.py --help<br>```<br><br>## Research Results & Evaluation Data<br>### RQ1: Bug Report Improvement Evaluation (139 reports)<br>**Manual Evaluation Results:**<br>- [`RQ1-RQ2/RQ1/manual_evaluation/Author 1 Responses.csv`](<u>RQ1-RQ2/RQ1/manual_evaluation/Author 1 Responses.csv</u>) - First evaluator assessments<br>- [`RQ1-RQ2/RQ1/manual_evaluation/Author 2 Responses.csv`](<u>RQ1-RQ2/RQ1/manual_evaluation/Author 2 Responses.csv</u>) - Second evaluator assessments <br>- [`RQ1-RQ2/RQ1/manual_evaluation/Final Results.csv`](<u>RQ1-RQ2/RQ1/manual_evaluation/Final Results.csv</u>) - Consolidated evaluation results<br><br>**Inter-Rater Agreement (Cohen's Kappa):**<br>- [`RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_s2r_label.png`](<u>RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_s2r_label.png</u>) - Steps to Reproduce κ scores<br>- [`RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_ob_label.png`](<u>RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_ob_label.png</u>) - Observed Behavior κ scores<br>- [`RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_eb_label.png`](<u>RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_eb_label.png</u>) - Expected Behavior κ scores<br><br>**Algorithm Results:**<br>- [`RQ1-RQ2/RQ1/algorithm_results/improbr_outputs/`](<u>RQ1-RQ2/RQ1/algorithm_results/improbr_outputs/</u>) - ImproBR improved reports<br>- [`RQ1-RQ2/RQ1/algorithm_results/chatbr_outputs/`](<u>RQ1-RQ2/RQ1/algorithm_results/chatbr_outputs/</u>) - ChatBR baseline results<br>- [`RQ1-RQ2/RQ1/algorithm_results/bee_analysis/`](<u>RQ1-RQ2/RQ1/algorithm_results/bee_analysis/</u>) - BEE tool structural analysis<br><br>### RQ2: Comparative Analysis vs ChatBR (37 pairs)<br>**Similarity Score Results:**<br>- [`RQ1-RQ2/RQ2/algorithm_results/similarity_scores/overall_tfidf.csv`](<u>RQ1-RQ2/RQ2/algorithm_results/similarity_scores/overall_tfidf.csv</u>) - TF-IDF similarity scores<br>- [`RQ1-RQ2/RQ2/algorithm_results/similarity_scores/overall_word2vec.csv`](<u>RQ1-RQ2/RQ2/algorithm_results/similarity_scores/overall_word2vec.csv</u>) - Word2Vec similarity scores<br>- [`RQ1-RQ2/RQ2/algorithm_results/similarity_scores/exact_string_comparisons.json`](<u>RQ1-RQ2/RQ2/algorithm_results/similarity_scores/exact_string_comparisons.json</u>) - Complete TF-IDF comparison with scores for each comparison unit (full debugging)<br>- [`RQ1-RQ2/RQ2/algorithm_results/similarity_scores/word2vec_comparisons.json`](<u>RQ1-RQ2/RQ2/algorithm_results/similarity_scores/word2vec_comparisons.json</u>) - Complete Word2Vec comparison with scores for each comparison unit (full debugging)<br><br>**Algorithm Outputs:**<br>- [`RQ1-RQ2/RQ2/algorithm_results/ImproBR_outputs/`](<u>RQ1-RQ2/RQ2/algorithm_results/ImproBR_outputs/</u>) - ImproBR enhanced reports<br>- [`RQ1-RQ2/RQ2/algorithm_results/ChatBR_outputs/`](<u>RQ1-RQ2/RQ2/algorithm_results/ChatBR_outputs/</u>) - ChatBR baseline outputs<br>- [`RQ1-RQ2/RQ2/dataset/ground_truth/`](<u>RQ1-RQ2/RQ2/dataset/ground_truth/</u>) - High-quality reference reports<br>## Important Notes<br><br>1. …"

Figure 8 from Prostate Cancer Progression Modeling Provides Insight into Dynamic Molecular Changes Associated with Progressive Disease States حسب Runpu Chen (14942572)

"…Each tumor sample was color-coded by its <i>ERG</i> fusion status inferred by the <i>ERG</i> gene expression level. …"

<b>A virtual tracer experiment to assess the temporal origin of root water uptake, evaporation, and </b><b>drainage</b> حسب Paolo Nasta (19710883)

"…</p><p dir="ltr"><a href="" target="_blank">Two open-source Matlab scripts are available in the zip-files. The PT.m Matlab code determines the drainage transit time based on the particle tracking algorithm, while the VTE.m Matlab code determines the drainage and RWU transit times and relative rainfall contributions to actual evaporation, actual transpiration, and drainage using isotope transport simulations in HYDRUS-1D</a>. …"

Data Sheet 1_MACRPO: Multi-agent cooperative recurrent policy optimization.pdf حسب Eshagh Kargar (20458304)

"…The results show superior performance against other algorithms. The code is available online at https://github.com/kargarisaac/macrpo.…"

Code repository حسب Dimitrios Iason Papadopoulos (21556811)

"…A portion of the resulting data is used to train various ML models aimed at both classifying the type of damage and estimating its severity. …"

CIOP database حسب Zeyi Wang (19846350)

"…</p><p dir="ltr">The database is produced from a throughput experiment and a regression algorithm.</p><p dir="ltr">10 common SEI containing elements are included and will be updated based on more experimental data later. …"

Video 2_MACRPO: Multi-agent cooperative recurrent policy optimization.mp4 حسب Eshagh Kargar (20458304)

"…The results show superior performance against other algorithms. The code is available online at https://github.com/kargarisaac/macrpo.…"

Video 1_MACRPO: Multi-agent cooperative recurrent policy optimization.mp4 حسب Eshagh Kargar (20458304)

"…The results show superior performance against other algorithms. The code is available online at https://github.com/kargarisaac/macrpo.…"

Video 3_MACRPO: Multi-agent cooperative recurrent policy optimization.mp4 حسب Eshagh Kargar (20458304)

"…The results show superior performance against other algorithms. The code is available online at https://github.com/kargarisaac/macrpo.…"

Survey Data on NSSI, Stress Response, Emotional Regulation Strategies and gender in Chinese Undergraduates حسب Yilin Ma (21154754)

"…</p><p dir="ltr"><b>Behavioral sub-questionnaire (AFASM1-12) :</b> Assesses NSSI with or without visible tissue damage</p><p dir="ltr"><b>Functional sub-questionnaire (BFASM1-19):</b> Measures three function types</p><ul><li><i>Automatic negative reinforcement: r</i>efers to engaging in NSSI to relieve or escape from an unpleasant internal state</li><li><i>Social positive reinforcement: </i>refers to engaging in NSSI to create a favorable state or to fulfill social needs</li><li><i>Emotional expression:</i>refers to engaging in NSSI as a means of expressing one’s emotional experiences</li></ul><p dir="ltr"><b>Scale:</b> 5-point Likert scale</p><h3><b>4.Gender</b></h3><ul><li>In this study, males were coded as “1” and females as “2”.</li></ul><p dir="ltr"><b>Usage Notes</b></p><ul><li></li><li>Each row represents one participant; columns include both item‑level and aggregated subscale scores.…"

Image 1_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.tif حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 9_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 6_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 3_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 7_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 10_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 2_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 5_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 8_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"

Table 4_Transcriptomic insights into the mechanism of action of telomere-related biomarkers in rheumatoid arthritis.xlsx حسب Lijuan Feng (3746086)

"…Biomarkers were subsequently identified using machine learning algorithms, receiver operating characteristic analysis, and expression level comparisons between RA and control samples. …"