MHC II binding predictions by Robert Sinkovits (8918225)

“…An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction. …”

Optimization results of MBB multi-material structure under different methods. (a) A level-set method for multi-material topology optimization [33]. (b) An alternating active-phase... by Zhao Li (300229)

Rationalisation of 5 structures (A50R) based on AlphaFold2 modeling as well as the scoring of pLDDT and Ptmscore. by Huaichuan Duan (6458477)

Rationalisation of 5 structures (I7L) based on AlphaFold2 modeling as well as the scoring of pLDDT and Ptmscore. by Huaichuan Duan (6458477)

Rationalisation of 5 structures (C19L) based on AlphaFold2 modeling as well as the scoring of pLDDT and Ptmscore. by Huaichuan Duan (6458477)

Rationalisation of 5 structures (A22R) based on AlphaFold2 modeling as well as the scoring of pLDDT and Ptmscore. by Huaichuan Duan (6458477)

Python code for estimating parameters of an ALAAM model. by Alex Stivala (8356257)

“…<p>This code uses ALAAMEE with the stochastic approximation algorithm to estimate ALAAM parameters and their standard errors for the teenage friends and lifestyle data excerpt, with smoking as the outcome variable. …”

Model code by Waltraud Schulze (20695250)

“…The latter provides insights into the inherent texture complexity of the image data due to the lossless coding. For classification of leaf surfaces from tree species based on the computed features, we utilized the k-nearest neighbors (kNN) algorithm with k=3. …”

IgStrand Alignment of 107 SARS-CoV-2 antigen binding VH, VL, CH1, CL domains in Excel format. by Caesar Tawfeeq (21087272)

Antivirus system workflow by Paul A. Gagniuc (1818325)

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Data and code availability: Machine Learning on systematically curated data reveals key determinants of magnetic hyperthermia performance by Edgar Vega (21981590)

code_4 by Olga Ovtsarenko (20432033)

Code repository by Dimitrios Iason Papadopoulos (21556811)

“…<pre>This repository contains the code that was used to conduct the experiments that are mentioned in the paper.…”

S1 Code - by Gaosha Li (20570760)

CH1:CL interactions of Fabs binding SARS-CoV-2 spike protein (70% cutoff). Red numbers represent symmetric contacts. Bold contacts show highly conserved hydrogen bonding. Bold cont... by Caesar Tawfeeq (21087272)

PyNoetic’s unique pick-place configurable flowchart that offers a no-code option for non-programmers. by Gursimran Singh (575288)

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An overview of PATH⁺. by Yuxi Long (11024307)

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The 10 features captured by persistence fingerprint. by Yuxi Long (11024307)

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^aTwo HIV-1 protease mutants bound to inhibitor darunavir (G48V: PDB ID 3cyw [81] & L90M: PDB ID 2f81 [82]). by Yuxi Long (11024307)

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Scatter plots of PATH⁺ and our implementation of TNet-BP’s predictions on a held-out, test subset of PDBBind v2020 refined set for one run (90:10 train:test split ratio,... by Yuxi Long (11024307)

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