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Data Sheet 1_ARGContextProfiler: extracting and scoring the genomic contexts of antibiotic resistance genes using assembly graphs.pdf
Published 2025“…By leveraging the assembly graph for genomic neighborhood extraction and validating contexts through read mapping, ARGContextProfiler minimizes chimeric errors that are a common artifact of assembly outputs. Testing on real, synthetic, and semi-synthetic data, including long-read sequencing data from environmental samples, demonstrated that ARGContextProfiler offers superior accuracy, precision, and sensitivity compared to conventional assembly-based methods. …”
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Additional file 1 of The origin and evolution of cultivated rice and genomic signatures of heterosis for yield traits in super-hybrid rice
Published 2025“…Each gene's expression data is associated with a specific tissue sample, using a naming convention that includes the gene identifier, variety code, and tissue type, separated by underscores. …”