Collaborative Research: A multi-fidelity computational framework for vascular mechanobiology in SimVascular by Han Zhao (21609785)

“…This work presents an open-source algorithm for generating synthetic, space-filling vascular networks beyond image resolution limits. …”

<b>An Empirical Evaluation of Software Quality Classification Based on User Feedback Aligned</b><b>with ISO/IEC 25010</b> by mesut polatgil (22408147)

“…<p dir="ltr">Evaluating software quality without access to the source code is a challenging task, as traditional metrics and testing approaches often rely on internal code analysis. …”

Processed Dataset for “Optimization of Mixed-Model Multi-Manned Assembly Lines for Fuel–Electric Vehicle Co-Production under Workstation Sharing” by Lingling Hu (22555691)

“…It can be used to replicate the analysis and experiments presented in the paper or to test new optimization algorithms for mixed-model assembly line balancing.</p><p dir="ltr">The data are provided in <code>.xlsx</code> format and can be freely accessed for <b>academic and non-commercial purposes only</b>.…”

Table 1_Application of digital tools and artificial intelligence in the Myasthenia Gravis Core Examination.docx by Marc Garbey (393550)

“…Background<p>Advances in video image analysis and artificial intelligence provide opportunities to transform how patients are evaluated. …”

Processed Dataset for “Modeling and Optimization of a Mixed-Model Two-Sided Assembly Line Balancing Problem Considering a Workstation-Sharing Mechanism” by Lingling Hu (22555691)

“…</p><p dir="ltr">The data are provided in <code>.xlsx</code> format and may be freely accessed and reused for <b>academic and non-commercial purposes only</b>.…”

Text-to-SQL Verification Methods and Benchmark by Tarfah Alrashed (15442229)

“…The code allows for the reproduction of our verification experiments and the evaluation of other verification algorithms on our new benchmark.…”

Classification of cell types in the leaf and the sepal. by Frances K. Clark (5617169)

“…Associated with <a href="http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.3003469#pbio.3003469.s010" target="_blank">S10 Fig</a>. The code and data associated with this figure can be found at Open Science Framework (osf.io), <a href="https://doi.org/10.17605/OSF.IO/RFCWS" target="_blank">https://doi.org/10.17605/OSF.IO/RFCWS</a>.…”

Multi-Task Learning for Gaussian Graphical Regressions with High Dimensional Covariates by Jingfei Zhang (580874)

“…We also develop an efficient augmented Lagrangian algorithm for computation, which solves subproblems with a semi-smooth Newton method. …”

The 2009 FDA PRO guidance, Potential Type I error, Descriptive Statistics and Pragmatic estimation of the number of interviews for item elicitation by Josh Fleckner (22075124)

“…The URN model provides a framework to demonstrate that an algorithm such as “first interview with zero new codes” may establish that all codes have been elicited. …”

Polar perspectives: a deep dive into geo-referencing historical Antarctic photos by Felix Dahle (19724405)

“…To aid the process, we use already known approximate positions of the historical images. …”

Gaze Inputs for Targeting: The Eyes Have It, Not With a Cursor by Ajoy S. Fernandes (22293773)

“…If the participant looked out of the grid boundary, on button press, we chose to select the last targeted element, but no other algorithms to enhance performance were employed. …”

TreeMap 2016: A tree-level model of the forests of the conterminous United States circa 2016 by Karin L. Riley (19657882)

“…We used a random forests machine-learning algorithm to impute the forest plot data to a set of target rasters provided by Landscape Fire and Resource Management Planning Tools (LANDFIRE: https://landfire.gov). …”

ImproBR Replication Package by Anonymus (18533633)

“…<br><br>**Import Errors:**<br>Make sure you're in the replication package directory:<br>```bash<br>cd ImproBR-Replication<br>python improbr_pipeline.py --help<br>```<br><br>## Research Results & Evaluation Data<br>### RQ1: Bug Report Improvement Evaluation (139 reports)<br>**Manual Evaluation Results:**<br>- [`RQ1-RQ2/RQ1/manual_evaluation/Author 1 Responses.csv`](<u>RQ1-RQ2/RQ1/manual_evaluation/Author 1 Responses.csv</u>) - First evaluator assessments<br>- [`RQ1-RQ2/RQ1/manual_evaluation/Author 2 Responses.csv`](<u>RQ1-RQ2/RQ1/manual_evaluation/Author 2 Responses.csv</u>) - Second evaluator assessments <br>- [`RQ1-RQ2/RQ1/manual_evaluation/Final Results.csv`](<u>RQ1-RQ2/RQ1/manual_evaluation/Final Results.csv</u>) - Consolidated evaluation results<br><br>**Inter-Rater Agreement (Cohen's Kappa):**<br>- [`RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_s2r_label.png`](<u>RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_s2r_label.png</u>) - Steps to Reproduce κ scores<br>- [`RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_ob_label.png`](<u>RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_ob_label.png</u>) - Observed Behavior κ scores<br>- [`RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_eb_label.png`](<u>RQ1-RQ2/RQ1/cohen's_cappa_coefficient_matrices/confusion_matrix_eb_label.png</u>) - Expected Behavior κ scores<br><br>**Algorithm Results:**<br>- [`RQ1-RQ2/RQ1/algorithm_results/improbr_outputs/`](<u>RQ1-RQ2/RQ1/algorithm_results/improbr_outputs/</u>) - ImproBR improved reports<br>- [`RQ1-RQ2/RQ1/algorithm_results/chatbr_outputs/`](<u>RQ1-RQ2/RQ1/algorithm_results/chatbr_outputs/</u>) - ChatBR baseline results<br>- [`RQ1-RQ2/RQ1/algorithm_results/bee_analysis/`](<u>RQ1-RQ2/RQ1/algorithm_results/bee_analysis/</u>) - BEE tool structural analysis<br><br>### RQ2: Comparative Analysis vs ChatBR (37 pairs)<br>**Similarity Score Results:**<br>- [`RQ1-RQ2/RQ2/algorithm_results/similarity_scores/overall_tfidf.csv`](<u>RQ1-RQ2/RQ2/algorithm_results/similarity_scores/overall_tfidf.csv</u>) - TF-IDF similarity scores<br>- [`RQ1-RQ2/RQ2/algorithm_results/similarity_scores/overall_word2vec.csv`](<u>RQ1-RQ2/RQ2/algorithm_results/similarity_scores/overall_word2vec.csv</u>) - Word2Vec similarity scores<br>- [`RQ1-RQ2/RQ2/algorithm_results/similarity_scores/exact_string_comparisons.json`](<u>RQ1-RQ2/RQ2/algorithm_results/similarity_scores/exact_string_comparisons.json</u>) - Complete TF-IDF comparison with scores for each comparison unit (full debugging)<br>- [`RQ1-RQ2/RQ2/algorithm_results/similarity_scores/word2vec_comparisons.json`](<u>RQ1-RQ2/RQ2/algorithm_results/similarity_scores/word2vec_comparisons.json</u>) - Complete Word2Vec comparison with scores for each comparison unit (full debugging)<br><br>**Algorithm Outputs:**<br>- [`RQ1-RQ2/RQ2/algorithm_results/ImproBR_outputs/`](<u>RQ1-RQ2/RQ2/algorithm_results/ImproBR_outputs/</u>) - ImproBR enhanced reports<br>- [`RQ1-RQ2/RQ2/algorithm_results/ChatBR_outputs/`](<u>RQ1-RQ2/RQ2/algorithm_results/ChatBR_outputs/</u>) - ChatBR baseline outputs<br>- [`RQ1-RQ2/RQ2/dataset/ground_truth/`](<u>RQ1-RQ2/RQ2/dataset/ground_truth/</u>) - High-quality reference reports<br>## Important Notes<br><br>1. …”

Data Sheet 1_Exploring nonlinear and interaction effects of urban campus built environments on exercise walking using crowdsourced data.csv by Bo Lu (241075)

“…</p>Methods<p>This study utilized crowdsourced exercise walking data and incorporated diverse campus characteristics to construct a multidimensional variable system. …”

Data Sheet 2_Exploring nonlinear and interaction effects of urban campus built environments on exercise walking using crowdsourced data.csv by Bo Lu (241075)

“…</p>Methods<p>This study utilized crowdsourced exercise walking data and incorporated diverse campus characteristics to construct a multidimensional variable system. …”

Genomic determinants in pathogenicity of SARS-CoV-2 versa common cold coronaviruses by Zahra Arab-Bafrani (20309630)

“…To this aim, at first, in the full genome of all coronavirus strains included in this study, the observed and expected frequency of dinucleotide to hexanucleotide was obtained using Markov method. Then odds ratio (observed/expected abundances) of short oligonucleotide was computed and considered as the raw data (features). …”

DataSheet1_Enhancing slope stability prediction through integrated PCA-SSA-SVM modeling: a case study of LongLian expressway.docx by Jianxin Huang (11944014)

“…Traditional slope stability analysis methods, such as the limit equilibrium method, limit analysis method, and finite element method, often face limitations due to computational complexity and the need for extensive soil property data. …”

Integrating drought warning water level with analytical hedging for reservoir water supply operation by Wenhua Wan (8051543)

“…</p><p dir="ltr">2. R codes for the HR-based DP algorithm, the processes deriving seasonal DWWL, and the statistical performance of HR with DWWL during typical drought years.…”

TreeMap 2020 CONUS: A tree-level model of the forests of the conterminous United States circa 2020 by Scott N. Zimmer (20807459)

“…We used a Random Forest machine-learning algorithm to impute the forest plot data to a set of target rasters provided by Landscape Fire and Resource Management Planning Tools (LANDFIRE) and Daymet (Daymet). …”

TreeMap 2022 CONUS: A tree-level model of the forests of the conterminous United States circa 2022 by Rachel M. Houtman (19658365)

“…We used a Random Forest machine-learning algorithm to impute the forest plot data to a set of target rasters provided by Landscape Fire and Resource Management Planning Tools (LANDFIRE) and Daymet (Daymet). …”