Workflow overview to reconstruct integrated host-virus genome-scale models and detect promising compounds with an antiviral activity. by Nantia Leonidou (14833068)

DataSheet_1_A Novel Radiogenomics Biomarker Based on Hypoxic-Gene Subset: Accurate Survival and Prognostic Prediction of Renal Clear Cell Carcinoma.doc by Jiahao Gao (7799222)

“…Purpose<p>To construct a novel radiogenomics biomarker based on hypoxic-gene subset for the accurate prognostic prediction of clear cell renal cell carcinoma (ccRCC).…”

Presentation1_A novel approach to analyze the association characteristics between post-spliced introns and their corresponding mRNA.zip by Suling Bo (11146299)

Image 1_Construction of a diagnostic model and identification of effect genes for diabetic kidney disease with concurrent vascular calcification based on bioinformatics and multipl... by Lili Huang (125493)

Maternal blood <i>EBF1</i>-based microRNA transcripts as biomarkers for detecting risk of spontaneous preterm birth: a nested case-control study by Guoli Zhou (225819)

“…<p>Both genetic variants and maternal blood mRNA levels of <i>EBF1</i> gene have been linked to sPTB. Animal and human studies suggest that specific <i>EBF1</i>-based miRNAs are involved in various physiological and pathophysiological processes. …”

Summary of steps in iterative point set registration for scRNA-seq data. by Amir Alavi (9569337)

BOFdat Step 3: Identifying species-specific metabolic end goals. by Jean-Christophe Lachance (6619307)

The evolution of gene-specific expression noise was simulated using populations of model gene regulatory networks with mutable levels of gene-specific expression noise under select... by Nataša Puzović (7866440)

“…If the populations are evolved under selection, fitness is calculated as the distance of the expression level of each gene from the optimal expression level. Genotypes are reproduced based on their relative fitness and mutations in the intrinsic noise vectors are introduced. …”

Data Sheet 1_AlgaeOrtho, a bioinformatics tool for processing ortholog inference results in algae.docx by Mary-Francis LaPorte (20821568)

“…One of the crucial steps in this process is deciding on a bioengineering target: namely, which gene/protein to differentially express. …”

Streamlining signaling pathway reconstruction presentation by Chris Magnano (10760405)

“…Each individual method has its own input and output file formats, installation process, and user-specified parameters. Different algorithms employ varied objective functions and optimization strategies, and recognizing which method is appropriate for a particular dataset and how to set its unique parameters requires domain expertise in pathway reconstruction. …”

Table_1_A Novel Network Pharmacology Strategy to Decode Mechanism of Lang Chuang Wan in Treating Systemic Lupus Erythematosus.xlsx by Yao Gao (1420339)

“…Most of these models focus on the 2D/3D similarity of chemical structure of drug components and ignore the functional optimization space based on relationship between pathogenetic genes and drug targets. …”

Image_1_A Novel Network Pharmacology Strategy to Decode Mechanism of Lang Chuang Wan in Treating Systemic Lupus Erythematosus.tif by Yao Gao (1420339)

“…Most of these models focus on the 2D/3D similarity of chemical structure of drug components and ignore the functional optimization space based on relationship between pathogenetic genes and drug targets. …”

Changes in GABA neurons (RiboTag::Gad2-Cre). by Lech Kaczmarczyk (587512)

Changes in glutamatergic neurons (RiboTag::vGluT2-Cre). by Lech Kaczmarczyk (587512)

Changes in astrocytes (RiboTag::Cx43-Cre). by Lech Kaczmarczyk (587512)

Table2_Comprehensive analysis of key m5C modification-related genes in type 2 diabetes.XLSX by Yaxian Song (10454804)

“…The CIBERSORT algorithm was applied to analyze the interactions between hub gene expression and immune infiltration.…”

Table1_Comprehensive analysis of key m5C modification-related genes in type 2 diabetes.XLSX by Yaxian Song (10454804)

“…The CIBERSORT algorithm was applied to analyze the interactions between hub gene expression and immune infiltration.…”

Presentation1_Comprehensive analysis of key m5C modification-related genes in type 2 diabetes.PDF by Yaxian Song (10454804)

“…The CIBERSORT algorithm was applied to analyze the interactions between hub gene expression and immune infiltration.…”

Image1_Comprehensive analysis of key m5C modification-related genes in type 2 diabetes.PDF by Yaxian Song (10454804)

“…The CIBERSORT algorithm was applied to analyze the interactions between hub gene expression and immune infiltration.…”

Table_3_Feature Selection for Breast Cancer Classification by Integrating Somatic Mutation and Gene Expression.XLSX by Qin Jiang (503001)

“…In the stage of feature selection, we propose a staged feature selection algorithm, using fold change, false discovery rate to select differentially expressed genes, mutual information to remove the irrelevant and redundant features, and the embedded method based on gradient boosting decision tree with Bayesian optimization to obtain an optimal model. …”