Key gene identification based on two machine learning algorithms. by Lijun Guo (605276)

DataSheet_1_Comparative analysis of assembly algorithms to optimize biosynthetic gene cluster identification in novel marine actinomycete genomes.docx by Daniela Tizabi (10297654)

DataSheet_2_Comparative analysis of assembly algorithms to optimize biosynthetic gene cluster identification in novel marine actinomycete genomes.pdf by Daniela Tizabi (10297654)

Optimal image settings for object detection of Iba1 immunolabelled cells in DAB. by Danish M. Anwer (15383441)

Graphical illustration of sample size estimation for the study protocol. by Müge Yalçin (16486563)

Subjects:

Study design flow chart. by Müge Yalçin (16486563)

Subjects:

Table 1_A computational framework for optimizing mRNA vaccine delivery via AI-guided nanoparticle design and in silico gene expression profiling.pdf by Valentina Di Salvatore (6296114)

“…Differential gene expression analysis identified compartment-specific transcriptional responses, which were then used to construct a risk index based on predicted immune activation and the number of upregulated immune markers. …”

Presentation 1_A computational framework for optimizing mRNA vaccine delivery via AI-guided nanoparticle design and in silico gene expression profiling.pdf by Valentina Di Salvatore (6296114)

“…Differential gene expression analysis identified compartment-specific transcriptional responses, which were then used to construct a risk index based on predicted immune activation and the number of upregulated immune markers. …”

Table 2_A computational framework for optimizing mRNA vaccine delivery via AI-guided nanoparticle design and in silico gene expression profiling.pdf by Valentina Di Salvatore (6296114)

“…Differential gene expression analysis identified compartment-specific transcriptional responses, which were then used to construct a risk index based on predicted immune activation and the number of upregulated immune markers. …”

Image 1_A computational framework for optimizing mRNA vaccine delivery via AI-guided nanoparticle design and in silico gene expression profiling.png by Valentina Di Salvatore (6296114)

“…Differential gene expression analysis identified compartment-specific transcriptional responses, which were then used to construct a risk index based on predicted immune activation and the number of upregulated immune markers. …”

Image 2_A computational framework for optimizing mRNA vaccine delivery via AI-guided nanoparticle design and in silico gene expression profiling.png by Valentina Di Salvatore (6296114)

“…Differential gene expression analysis identified compartment-specific transcriptional responses, which were then used to construct a risk index based on predicted immune activation and the number of upregulated immune markers. …”

MultiCRISPR-EGA: Optimizing Guide RNA Array Design for Multiplexed CRISPR Using the Elitist Genetic Algorithm by Yangyu Zhang (4609117)

“…Recognizing that more stable gRNAs, characterized by lower minimum free energy (MFE), have prolonged activity and thus higher efficacy, we developed MultiCRISPR-EGA, a graphical user interface (GUI)-based tool that employs the Elitist Genetic Algorithm (EGA) to design optimized single-promoter-driven multiplexed gRNA arrays. …”

Stochastic simulation and statistical inference platform for visualization and estimation of transcriptional kinetics by Gennady Gorin (8466255)

“…As a demonstration, we show that the optimization algorithm can successfully recover the transcriptional kinetics of simulated and experimental gene expression data. …”

Testing algorithm for modified 2-tiered approaches to Lyme disease diagnosis. by Richard Porwancher (11413931)

Distributions of model parameters mirror differentially expressed ion channel genes. by Daniele Linaro (227790)

DataSheet1_SS-RNN: A Strengthened Skip Algorithm for Data Classification Based on Recurrent Neural Networks.pdf by Wenjie Cao (780652)

Table_1_Overlapping Structures Detection in Protein-Protein Interaction Networks Using Community Detection Algorithm Based on Neighbor Clustering Coefficient.docx by Yan Wang (15435)

Table_1_Overlapping Structures Detection in Protein-Protein Interaction Networks Using Community Detection Algorithm Based on Neighbor Clustering Coefficient.docx by Yan Wang (15435)

Raw Data for the Thesis: "<i>Enhancing RNAi-Based Pest Control through Effective Target Gene Selection and Optimal dsRNA Design</i>" by Doga CEDDEN (12675286)

“…</p><p><br></p><p dir="ltr">Chapter 4 introduces the dsRIP web platform (<a href="https://dsrip.uni-goettingen.de/" target="_blank">https://dsrip.uni-goettingen.de/</a>) for designing sequence-optimized dsRNA for RNAi-based pest control. In the experimental part, small interfering RNA (siRNA) features that were associated with RNAi efficacy in human cells were tested in <i>T. castaneum </i>by targeting an essential gene and measuring insecticidal efficacy. …”

<i>hi</i>PRS algorithm process flow. by Michela C. Massi (14599915)

“…The sequences can include from a single SNP-allele pair up to a maximum number of pairs defined by the user (<i>l</i>_max). <b>(C)</b> The whole training data is then scanned, searching for these sequences and deriving a re-encoded dataset where interaction terms are binary features (i.e., 1 if sequence <i>i</i> is observed in <i>j</i>-th patient genotype, 0 otherwise). …”