Raw Data for the Thesis: "<i>Enhancing RNAi-Based Pest Control through Effective Target Gene Selection and Optimal dsRNA Design</i>" حسب Doga CEDDEN (12675286)

Data_Sheet_1_Transcriptome-Based Selection and Validation of Reference Genes for Gene Expression Analysis of Alicyclobacillus acidoterrestris Under Acid Stress.PDF حسب Ning Zhao (84707)

"…The expression stability of eight new RGs and commonly used RG 16s rRNA was assessed using geNorm, NormFinder, and BestKeeper algorithms. Moreover, the comprehensive analysis using the RefFinder program and the validation using target gene ctsR showed that dnaG and dnaN were the optimal multiple RGs for normalization at pH 4.0; ytvI, dnaG, and 16s rRNA at pH 3.5; icd and dnaG at pH 3.0; and ytvI, dnaG, and spoVE at pH 2.5. …"

Data_Sheet_2_Transcriptome-Based Selection and Validation of Reference Genes for Gene Expression Analysis of Alicyclobacillus acidoterrestris Under Acid Stress.xls حسب Ning Zhao (84707)

"…The expression stability of eight new RGs and commonly used RG 16s rRNA was assessed using geNorm, NormFinder, and BestKeeper algorithms. Moreover, the comprehensive analysis using the RefFinder program and the validation using target gene ctsR showed that dnaG and dnaN were the optimal multiple RGs for normalization at pH 4.0; ytvI, dnaG, and 16s rRNA at pH 3.5; icd and dnaG at pH 3.0; and ytvI, dnaG, and spoVE at pH 2.5. …"

Table_1_One-Time Optimization of Advanced T Cell Culture Media Using a Machine Learning Pipeline.DOCX حسب Paul Grzesik (11136582)

Table_1_BLVector: Fast BLAST-Like Algorithm for Manycore CPU With Vectorization.XLSX حسب Sergio Gálvez (548022)

Data_Sheet_3_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen... حسب Qianyu Lin (4687312)

"…Statistical analysis of integral mutations and global spread are necessary and could help improve primer design for nucleic acid diagnosis and vaccine development. Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …"

Data_Sheet_4_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen... حسب Qianyu Lin (4687312)

"…Statistical analysis of integral mutations and global spread are necessary and could help improve primer design for nucleic acid diagnosis and vaccine development. Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …"

Data_Sheet_2_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen... حسب Qianyu Lin (4687312)

"…Statistical analysis of integral mutations and global spread are necessary and could help improve primer design for nucleic acid diagnosis and vaccine development. Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …"

Data_Sheet_1_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen... حسب Qianyu Lin (4687312)

"…Statistical analysis of integral mutations and global spread are necessary and could help improve primer design for nucleic acid diagnosis and vaccine development. Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …"

Data_Sheet_6_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen... حسب Qianyu Lin (4687312)

"…Statistical analysis of integral mutations and global spread are necessary and could help improve primer design for nucleic acid diagnosis and vaccine development. Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …"

Data_Sheet_5_Deciphering the Subtype Differentiation History of SARS-CoV-2 Based on a New Breadth-First Searching Optimized Alignment Method Over a Global Data Set of 24,768 Sequen... حسب Qianyu Lin (4687312)

"…Statistical analysis of integral mutations and global spread are necessary and could help improve primer design for nucleic acid diagnosis and vaccine development. Here, we optimized multiple sequence alignment using a conserved sequence search algorithm to align 24,768 sequences from the GISAID data set. …"

Data_Sheet_1_CLGBO: An Algorithm for Constructing Highly Robust Coding Sets for DNA Storage.docx حسب Yanfen Zheng (3814507)

Table1_Novel amino acid metabolism‐related gene signature to predict prognosis in clear cell renal cell carcinoma.XLSX حسب Xiaofeng Cheng (1485481)

"…This study aims to develop a novel consensus signature based on the AAM-related genes.</p><p>Methods: The RNA-seq expression data and clinical information for ccRCC were downloaded from the TCGA (KIRC as training dataset) and ArrayExpress (E-MTAB-1980 as validation dataset) databases. …"

Image3_Novel amino acid metabolism‐related gene signature to predict prognosis in clear cell renal cell carcinoma.tif حسب Xiaofeng Cheng (1485481)

"…This study aims to develop a novel consensus signature based on the AAM-related genes.</p><p>Methods: The RNA-seq expression data and clinical information for ccRCC were downloaded from the TCGA (KIRC as training dataset) and ArrayExpress (E-MTAB-1980 as validation dataset) databases. …"

Image1_Novel amino acid metabolism‐related gene signature to predict prognosis in clear cell renal cell carcinoma.TIF حسب Xiaofeng Cheng (1485481)

"…This study aims to develop a novel consensus signature based on the AAM-related genes.</p><p>Methods: The RNA-seq expression data and clinical information for ccRCC were downloaded from the TCGA (KIRC as training dataset) and ArrayExpress (E-MTAB-1980 as validation dataset) databases. …"

Table3_Novel amino acid metabolism‐related gene signature to predict prognosis in clear cell renal cell carcinoma.XLSX حسب Xiaofeng Cheng (1485481)

"…This study aims to develop a novel consensus signature based on the AAM-related genes.</p><p>Methods: The RNA-seq expression data and clinical information for ccRCC were downloaded from the TCGA (KIRC as training dataset) and ArrayExpress (E-MTAB-1980 as validation dataset) databases. …"

Table2_Novel amino acid metabolism‐related gene signature to predict prognosis in clear cell renal cell carcinoma.XLSX حسب Xiaofeng Cheng (1485481)

"…This study aims to develop a novel consensus signature based on the AAM-related genes.</p><p>Methods: The RNA-seq expression data and clinical information for ccRCC were downloaded from the TCGA (KIRC as training dataset) and ArrayExpress (E-MTAB-1980 as validation dataset) databases. …"

Image2_Novel amino acid metabolism‐related gene signature to predict prognosis in clear cell renal cell carcinoma.TIF حسب Xiaofeng Cheng (1485481)

"…This study aims to develop a novel consensus signature based on the AAM-related genes.</p><p>Methods: The RNA-seq expression data and clinical information for ccRCC were downloaded from the TCGA (KIRC as training dataset) and ArrayExpress (E-MTAB-1980 as validation dataset) databases. …"

Table 2_Cellular hierarchy framework based on single-cell and bulk RNA sequencing reveals fatty acid metabolic biomarker MYDGF as a therapeutic target for ccRCC.xlsx حسب Ning Wang (108353)

Table 1_Cellular hierarchy framework based on single-cell and bulk RNA sequencing reveals fatty acid metabolic biomarker MYDGF as a therapeutic target for ccRCC.docx حسب Ning Wang (108353)